Software | Research Software Directory

Parcels

Parcels (Probably A Really Computationally Efficient Lagrangian Simulator) is a set of Python classes and methods to create customisable particle tracking simulations using output from Ocean Circulation models. Parcels can be used to track passive and active particulates such as plastic and fish.

lagrangian-ocean-modelling
ocean-circulation-models
particles

(Python)

25

123

GrainLearning

Unsure about the parameters of your grains in a computer simulation? Use Iterative Bayesian Filtering to learn parameter distributions from limited data. Is your model running slowly? Speed up your simulations with machine-learning surrogates. All these features are integrated within GrainLearning.

Bayesian Inference
Data assimilation
Machine learning
+ 2

("Jupyter Notebook")
(PureBasic)
(Python)
+ 1

3

113

Matlab codes for Probabilistic Field Approach for Motorway Driving Risk Assessment

automated driving
Collision probability
Reachability analysis
+ 1

4

110

MAGMa

MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.

Big data
Visualization

(CSS)
(Cython)
(Dockerfile)
+ 5

3

110

TraP: The LOFAR Transients Pipeline

The LOFAR Transients Pipeline (or "TraP") is a Python and SQL based system for detecting and responding to transient and variable sources in a stream of astronomical images.

Image processing
radio astronomy
Source association
+ 3

(Mako)
(PLpgSQL)
(Python)
+ 1

6

110

R package for WALRUS (Wageningen Lowland Runoff Simulator)

discharge simulation
hydrological model
hydrology
+ 4

4

95

PROTEUS

PROTEUS is a Python framework that simulates the coupled evolution of the atmospheres and interiors of rocky planets.

Exoplanets
model coupling

(Julia)
("Jupyter Notebook")
(Python)
+ 1

13

90

iScore

A framework and predictor based on support vector machine and random walk graph kernel for scoring protein-protein interfaces.

Big data
Machine learning
Protein-Protein Interaction

(C++)
(Cuda)
(Makefile)
+ 1

4

88

Tillage-controlled Runoff Pattern model (TCRP) v1.1; a GIS model to adjust runoff patterns for tillage induced roughness in agricultural catchments

DEM
erosion pattern
modelling
+ 2

2

87

CHI2023_DKE

User Interaction Dataset for CHI 2023 paper "Knowing About Knowing: An Illusion of Human Competence Can Hinder Appropriate Reliance on AI Systems."

Appropriate Reliance
DunningKruger Effect
Human-AI Decision Making
+ 1

(large-text-file)
(Markdown)
(Other)
+ 2

3

86

grlc

Builds a web API from SPARQL queries hosted on GitHub to accessing triple store data.

garlic
Inter-operability & linked data

(CSS)
(Dockerfile)
(HTML)
+ 4

3

83

Code for Tiresias: Predicting Security Events Through Deep Learning

Event Analysis
Security

(Markdown)
(Other)
(Python)

1

80