pdb2sql
PD
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
Updated 8 months ago
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Deep learning framework for data mining protein-protein interactions using CNN
DeepRank is a general, configurable deep learning framework for data mining protein-protein interactions (PPIs) using 3D convolutional neural networks (CNNs).
DeepRank contains useful APIs for pre-processing PPIs data, computing features and targets, as well as training and testing CNN models.
Scoring 3D protein-protein interaction models using deep learning
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
Generates consistent PSSM and PDB files for protein-protein complexes