All software
PathVisio
PathVisio is a free open-source software to curate biological pathway models.
- bioinformatics
- PathVisio
- Systems Biology
- + 2
- (Batchfile)
- (CSS)
- (HTML)
- + 4
PIDIMEHS library
Showcases a diachronic analysis of the Dutch Royal Library's newspaper archive.
- Big data
- Real time data analysis
- Text analysis & natural language processing
- + 1
protein-quest
Python package to search/retrieve/filter proteins and protein structures
- (Python)
pyglotaran
A Python library for Global and Target Analysis of time-resolved spectroscopy data
- biophysics
- global analysis
- glotaran
- + 3
- (Nix)
- (Python)
Ricgraph - Research in context graph
With Ricgraph (Research in context graph), you can create a graph from research information that is stored in various source systems. You can explore this graph and discover relations you were not aware of.
- graph
- graph database
- research in context graph
- + 2
- (CSS)
- (Dockerfile)
- (HTML)
- + 5
sfb-annotator
Annotate field books of natural history collections
- Inter-operability & linked data
- (CSS)
- (Dockerfile)
- (Java)
- + 4
ShiCo
A visualization that shows how the meaning we attach to a given concept shifts over time.
- Text analysis & natural language processing
- Visualization
- (CSS)
- (Dockerfile)
- (HTML)
- + 3
tortellini
GitHub action to check whether any licensing issues exist for given software.
- (JavaScript)
- (TypeScript)
Pedestrian random walk in NetLogo (ch2.1)
A collection of methods for random walk in NetLogo, including various movement restrictions, biases, and algorithm alternatives.
Place them on the map
Multiple agent placement in specific geographical location. Set up an input number of agents (turtles) at an input location (cell or patch) in an grid holding the input spatial data (map).
Epidemic Network
Experimental environment for testing of large array of theoretical conditions for development epidemic event within various quantitative, spatial and connectedness (network structure) aspects.
Preferential Attachment Network
This NetLogo algorithm simulates network formation using preferential attachment. New nodes are more likely to connect to existing nodes with higher degrees, reflecting a "lottery" system where popular nodes attract more links.