All software
NEWSGAC platform
Software for running the online platform of the NEWSGAC project for running explainable machine learning models on textual data
- Explainable AI
- Machine learning
- Text analysis & natural language processing
- (CSS)
- (Dockerfile)
- (HTML)
- + 4
ochre
A tool to clean up text generated by OCR using individual words as well as their context.
- Machine learning
- Text analysis & natural language processing
- ("Common Workflow Language")
- (HTML)
- ("Jupyter Notebook")
- + 2
PathVisio
PathVisio is a free open-source software to curate biological pathway models.
- bioinformatics
- PathVisio
- Systems Biology
- + 2
- (Batchfile)
- (CSS)
- (HTML)
- + 4
PIDIMEHS library
Showcases a diachronic analysis of the Dutch Royal Library's newspaper archive.
- Big data
- Real time data analysis
- Text analysis & natural language processing
- + 1
protein-quest
Python package to search/retrieve/filter proteins and protein structures
- (Python)
pyglotaran
A Python library for Global and Target Analysis of time-resolved spectroscopy data
- biophysics
- global analysis
- glotaran
- + 3
- (Nix)
- (Python)
Ricgraph - Research in context graph
With Ricgraph (Research in context graph), you can create a graph from research information that is stored in various source systems. You can explore this graph and discover relations you were not aware of.
- graph
- graph database
- research in context graph
- + 2
- (CSS)
- (Dockerfile)
- (HTML)
- + 5
sfb-annotator
Annotate field books of natural history collections
- Inter-operability & linked data
- (CSS)
- (Dockerfile)
- (Java)
- + 4
ShiCo
A visualization that shows how the meaning we attach to a given concept shifts over time.
- Text analysis & natural language processing
- Visualization
- (CSS)
- (Dockerfile)
- (HTML)
- + 3
swiftmhc
SwiftMHC is a deep learning algorithm for predicting pMHC structure and binding affinity at the same time.
- deep learning
- Protein-Protein Interaction
- Transformer
- ("Jupyter Notebook")
- (Mask)
- (Python)
- + 1
tortellini
GitHub action to check whether any licensing issues exist for given software.
- (JavaScript)
- (TypeScript)
Pedestrian random walk in NetLogo (ch2.1)
A collection of methods for random walk in NetLogo, including various movement restrictions, biases, and algorithm alternatives.