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1324 software items. Page 24 of 28. 48 items per page.
1105-1152 of 1324

MSS-IMProv

An Integrative Modeling Platform

  • mass spectrometry
  • Modeling
  • proteins
1
0

mudicom

A Python library for interacting with DICOM files. Provides a simpler, more intuitive interface than other libraries.

  • Imaging and Image Processing
  • (Python)
0
0

MUSIMAN

In summary, the MUSIMAN package is a software tool to ease the parallelization of simulations run with the Monte Carlo code PENELOPE 2014

  • Treatment Planning and dosimetry
  • (MATLAB)
0
0

NanopubJL

JupyterLab extension to aid in searching and publishing of Nanopublications in a python notebook

  • Inter-operability & linked data
  • (CSS)
  • (Dockerfile)
  • (JavaScript)
  • + 3
2
0

Nature Counts

The NatureCounts platform allows users to collect, archive, interpret and access wildlife data to advance the understanding of bird populations across the Western Hemisphere.

  • bird monitoring
  • conservation science
  • open data
  • (CSS)
  • (R)
2
0

nedextract

nedextract is a python library that helps you to extract information on person names and organisations mentioned in Dutch (annual report) PDF files.

  • ("Jupyter Notebook")
  • (Python)
  • (Shell)
1
0

NetCDF2LittleR

An application to convert NetCDF files to the Little-R format

  • (CMake)
  • (Fortran)
  • (Pascal)
1
0

Network Simulation Engine

A modular financial risk management and policy-laboratory tool: simulates financial network topologies and translates them into liquidity outcomes, enabling evaluation of early-warning triggered dynamic buffers and central bank backstops for mitigating systemic liquidity shortfalls.

  • Financial networks
  • Liquidity
  • python
  • + 3
1
0

NeuroAnalyzer

NeuroAnalyzer is a Julia toolbox for analyzing neurophysiological data.

  • EEG
  • fNIRS
  • MEG
  • + 2
1
0

NeuroGym

NeuroGym is a curated collection of neuroscience tasks with a common interface. The goal is to facilitate the training of neural network models on neuroscience tasks.

  • deep learning
  • Machine learning
  • Neuroscience
  • + 3
  • (Python)
7
0

nnU-Net

nnU-Net is a semantic segmentation method that automatically adapts to a given dataset. It will analyze the provided training cases and automatically configure a matching U-Net-based segmentation pipeline.

  • Artificial Intelligence
  • (Python)
  • (Shell)
0
0

NPLinker eScience Workshop GenMetMine Materials

These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining: https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are available in a format facilitating its reuse.

  • Data mining
  • genomics
  • Inter-operability & linked data
  • + 4
0
0

Nunaliit

The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.

  • atlas
  • cartography
  • database
  • + 6
  • (C)
  • (CSS)
  • ("Go Template")
  • + 10
1
0

OBiBa Agate

Agate is a web application that offers users related services to the OBiBa software stack.

  • authentication
  • Epidemiology
  • (Batchfile)
  • (FreeMarker)
  • (HTML)
  • + 7
8
0

OBiBa Mica

Mica is OBiBa's software application that is used to create data web portals for large-scale epidemiological studies or multiple-study consortia.

  • euCanSHare, software integration
  • (Batchfile)
  • (CSS)
  • (FreeMarker)
  • + 7
8
0

OBiBa Opal

Opal is OBiBa's core data repository application for epidemiological studies.

  • euCanSHare, software integration
  • (ANTLR)
  • (Batchfile)
  • (HTML)
  • + 8
8
0

Ocean Networks Canada

By bringing data to the surface, ONC provides ocean intelligence to scientists, governments, organizations, and citizens. Ocean data are archived, processed and made freely available via ONC’s data management system, Oceans 3.0.

1
0

OCTSEG

Analyze retinal optical coherence tomography images.

  • Image processing
  • (M)
  • (MATLAB)
2
0

OMG Dosimetry

A Python package for performing dosimetry calculations and quality assurance tests. Provides a simple API for common dosimetry tasks.

  • Quality Assurance
  • (Batchfile)
  • (Python)
0
0

One button compute

Web application for running a CWL workflow on a bunch of files.

  • Optimized data handling
  • Workflow technologies
  • ("Common Workflow Language")
  • (HTML)
  • (Python)
2
0

OnkoDICOM

Cross-platform. Provides DVH output, clinical data capture (radiomics), Pyradiomics output, anonymization, ROI manipulation.

  • Imaging and Image Processing
  • (Python)
0
0

OpenDA

Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.

  • Optimized data handling
  • (Batchfile)
  • (Brainfuck)
  • (C)
  • + 23
4
0

Open Matrices Stimulus Set (omss)

omss is a Python package for generating matrix reasoning puzzles, inspired by Raven's Progressive Matrices. It allows users to generate an unlimited number of customizable puzzles across a range of difficulty levels by setting rules for visual elements.

  • Intelligence
  • Matrices
  • python
  • + 1
  • (Python)
4
0

OpenRefine

OpenRefine is a powerful free, open source tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.

  • Data Analysis
  • Data Science
  • (Batchfile)
  • (CSS)
  • (HTML)
  • + 8
0
0

OpenREGGUI

Image processing, open-source platform for research in proton therapy

  • Treatment Planning and dosimetry
0
0

OpenSim Creator

A UI for building OpenSim models

  • biomechanical engineering
  • opensim
  • Simulation
  • (AppleScript)
  • (C)
  • (C++)
  • + 1
2
0

OpenTPS

OpenTPS is an open-source treatment planning system (TPS) for research in radiation therapy and proton therapy.

  • Treatment Planning and dosimetry
  • (C)
  • (C++)
  • (Cuda)
  • + 2
0
0

opynsim

Python-Native Musculoskeletal Modelling

  • (Batchfile)
  • (BitBake)
  • (C)
  • + 14
1
0

Orange3 Argument Mining Add-on

This open-source Python package facilitates the processing, analysis, and visualization of argument corpora. Additionally, It offers user-friendly GUIs integrated into the Orange3 scientific workflow platform, enabling non-programmers to utilize its capabilities.

  • Argument mining
  • Natural Language Processing
  • python
  • + 1
  • (Python)
3
0

Orange3 Story Navigator

Add-on providing quantitative textual story analysis based on principles in narrative psychology

  • narrative psychology
  • orange3
  • text analysis
  • (Python)
6
0

Orange Hackathon

Orange modules for text processing in the project What Works When for Whom

  • (CSS)
  • ("Jupyter Notebook")
  • (Python)
  • + 2
3
0

Orthanc

Orthanc is a Belgian, open-source, lightweight DICOM server for healthcare and medical research.

  • Software Engineering and Data Infrastructure
0
0

OsiriX

Widely used DICOM viewer. Supports 2D, 3D, 4D, 5D viewing.

  • Imaging and Image Processing
  • (ActionScript)
  • (AppleScript)
  • (C)
  • + 12
0
0

Osmium

Start, stop and monitor applications remotely via a HTTP interface.

  • High performance computing
  • ("API Blueprint")
  • (Java)
2
0

oTree Demo Experiments

oTree demo experiment: Public goods game

  • behavioral research
  • oTree
  • Workflow technologies
  • (HTML)
  • (JavaScript)
  • (Procfile)
  • + 1
5
0

oTree Development Environment

A Docker environment for programming against multiple oTree server

  • oTree
  • (Dockerfile)
  • (Makefile)
  • (Shell)
2
0

oTree Waiting Room

A load balancer for oTree servers.

  • oTree
  • (HTML)
  • (JavaScript)
  • (Shell)
2
0

Overture Arranger

Data can be messy, let Arranger organize it for you.

  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 3
1
0

Overture Data Management System

Overture is a collection of open-source, extendable solutions for big-data genomic science that research institutions and individual researchers can use to support their work.

  • authentication
  • cloud storage
  • genomics
  • + 2
  • (Dockerfile)
  • (Java)
  • (Makefile)
  • + 1
2
0

Overture Ego

A stateless authorization and user management service.

  • Data Indexing
  • Elasticsearch Automation
  • (Dockerfile)
  • (Java)
  • (Makefile)
  • + 1
1
0

Overture Maestro

Organizing your distributed data into one index.

  • Data Indexing
  • Elasticsearch Automation
  • (Dockerfile)
  • (Groovy)
  • (Java)
  • + 1
1
0

Overture Score

Transfer data quickly and easily to and from any cloud-based storage system.

  • Cancer Genomics
  • Cloud Storage & Transfer
  • (Dockerfile)
  • (Java)
  • (Makefile)
  • + 1
1
0

Overture Song

Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.

  • Cancer Genomics
  • Metadata Management
  • Metadata Validation
  • (Batchfile)
  • (Dockerfile)
  • (Go)
  • + 7
1
0

PACTE

A Collaborative Electronic Text Annotation Platform

  • collaborative
  • corpus
  • disambiguation
  • + 5
1
0

PanTools-pipeline-v4

General purpose Snakemake pipeline for PanTools v4.

  • Data Analysis
  • genomics
  • pangenomics
  • (Dockerfile)
  • (Python)
  • (Shell)
5
0

paradigma

A toolbox to calculate digital biomarkers for wearable sensors in Parkinson's disease.

  • (Python)
0
0

parareal

This package runs the parareal algorithm on a black-box simulator. Parallelisation is managed through Dask.

  • High performance computing
  • Numerical analysis
  • (CSS)
  • (Dhall)
  • (HTML)
  • + 5
2
0

ParticleDA.jl

Julia package to perform data assimilation with particle filters, supporting both thread-based parallelism and distributed processing using MPI.

  • Data assimilation
  • Julia Package
  • Particle filter
  • (Julia)
  • ("Jupyter Notebook")
  • (Shell)
4
0