All software

fine-data-generator

FLAME GPU

FLAME GPU is a GPU accelerated simulator for domain independent complex systems simulations. FLAME GPU provides a mapping between a simple description of an agent and its interactions into optimised GPU code. The software abstracts the details and complexity of the GPU away from modellers.

flamingo

Compute and filter molecular properties for quantum dot ligands

flashgamma

Code written for personal educational purposes. Performed similarly to proprietary gamma analysis codes internally, but not guaranteed bug-free.

FLUKA

The FLUKA code is a general purpose Monte Carlo code for the interaction and transport of hadrons, leptons, and photons from keV (with the exception of neutrons, tracked down to thermal energies) to cosmic ray energies in any material.

fm128-radar

A python library to write ascii based fm128_radar files to be used in WRFDA

FoCa

FoCa is an in-house modular treatment planning system, developed entirely in MATLAB, which includes forward dose calculation of proton radiotherapy plans in both active and passive modalities as well as a generic optimization suite for inverse treatment planning.

fo-dicom

Targets.NET Standard 2.0. High-performance, asynchronous API.

Forecasting the grid emission factor for the Netherlands

A workflow to produce emission factor forecasts for the electricity mix of the Netherlands, up to 7 days ahead.

Davidson diagonalization in Fortran

This package contains a Modern Fortran implementation of the Davidson diagonalization algorithms to compute several eigenvalue-eigenvector pairs of a symmetric matrix

FOWT-ML

Machine learning kit for Hybrid testing in Floating Offshore Wind Turbines (FOWT).

FRED

GPU MC dose engine capable of simulating therapeutic protons, electrons and carbon ions.

FRoG

Independent dose and LETd prediction tool for proton therapy, GPU-accelerated, sandbox environment, supports variable RBE models. Not for clinical use.

Fundamentals of Natural Language Processing (NLP) in Python

This lesson teaches the fundamentals of Natural Language Processing (NLP) in Python.

GalerkinToolkit.jl

GalerkinToolkit is a high-performance finite element (FE) toolbox fully implemented in the Julia programming language. It provides modular building blocks to easily implement custom finite element codes to solve partial differential equations (PDEs) using a variety of numerical schemes.

GATE

GATE is open source, based on Geant4, and developed by the international OpenGATE collaboration

GEANT4

Toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics.

gemdat

a Generalized Molecular Dynamics Analysis Tool

Geoflow visualizer

Visualizes any type of flow between countries. Takes a CSV as input, applies filtering and aggregation (danfojs) to show relations and data in a number of visualizations (d3.js)

ggmice

The {ggmice} package provides visualization tools for incomplete and imputed data in R, compatible with {mice} and {ggplot2}.

GitHub action to set up gRPC

To compile C Plus code against gRPC in a GitHub action workflow you need to install it first. This GitHub action compiles or downloads it for you.

GitHub action to set up singularity

To use Singularity containers in a GitHub action workflow you need to install it first. This GitHub Action downloads, compiles and installs it for you.

GraphvizDotLang.jl

Interface for Graphviz in Julia. This module helps to create graph visualizations programatically in Julia, with Graphviz as a back-end.

grpc4bmi

Run, read and write model state of a numerical simulation written in a variety of languages remotely from Python

H2 scenario explorer

Web application to visualize hydrogen production scenarios as part of HyChain WP1

H2 scenario preprocessing

Preprocessing script to create a database for the H2 scenario explorer

Components for Haddock3 analysis

React components used by analyse command of haddock3 and haddock3 web application.

haddock3-ui

The haddock3 web application had several components that could be used outside of the web application. This software contains those components.

Hadrianus scripts

Scripts that transform cultural heritage relational databases into linked data by using cultural heritage ontologies.

Harmony

Making harmonisation simple. Social scientists often have to compare items from different questionnaires or datasets. Harmony is a tool that uses natural language processing and generative AI models to help researchers harmonise questionnaire items quickly, even in different languages.

YODA

YODA is a lightweight C++ and Python library for histogramming and statistical analysis, designed for use in particle physics workflows. It supports reproducible, high-performance data analysis and is the foundation for data handling in tools like Rivet.

HERA_CAL_QUANTUM

Radioastronomy calibration pipeline of the HERA telescope ported on quantum computers

H-gear

This tool analyzes the transmission of political ideas during the American Revolution. It enables users to track shifts in concepts in letter correspondence networks, using semi-supervised topic modeling and temporal social network modeling to reveal ideological shifts and identify key influencers.

hhl-prototype

The HHL prototype allows to use the HHL algorithm to solve linear system of equations

holodev

A command-line tool written in shell script to simplify the creation of LXC Linux containers.

HORTON

HORTON is a Helpful Open-source Research Tool for N-fermion systems, written primarily in the Python programming language. The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost.

HPGEM

hpGEM is a C++ partial differential equation solver. It is intended for Discontinuous Galerkin Finite Element Methods, but can also do normal (conforming) Finite Element Methods and Finite Volume.

htr-quality-classifier

A package to determine the quality of a a digitized text, from a handwritten script or scanned print (HTR/OCR output).

iBridges

A wrapper around the python-irodsclient to allow for easy interaction with iRODS servers for research software engineers to integrate compute wokflows and data management.

iBridges-GUI

A graphical user interface to iRODS employing the iBridges python package.

ICD_GEMs.jl

A Julia package that allows to translate ICD-9 into ICD-10 codes and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).

ICGC ARGO

Harmonising world-wide efforts to reduce the global burden of cancer

ICOS CP python library

This package, available at pip as icoscp, allows you to have direct access to data objects from the ICOS Carbon Portal where a "Preview" is available. It provides easy access to data objects hosted at the ICOS Carbon Portal. By using this library you can load data files directly into memory.

ICOS data repository

The ICOS Portal app is a FAIR linked data repository for metadata and data. In first instance primarily targeted at hosting the high quality data from ICOS. The repository is optimized for machine to machine communication. Instances in production now for ICOS, Swedish SITES and ICOS Cities networks.

I-EMIC

An Implicit Earth system Model of Intermediate Complexity

iEnvironment

iEnvironment is a web-based, extensible and distributed data management platform and user gateway for integrated environmental monitoring and modelling (IEMM).

IMAGE-LAND-LUE

This is a free and open source software (FOSS) Python version of the simulation model IMAGE-land, the land cover change model from the IMAGE 3.1 Integrated Assessment Model (IAM). Most, but not all, capabilities of the original model are included.

imas2xarray

Imas2xarray is a python library for reading IMAS data in hdf5 format into xarray.