All software
Nunaliit
The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.
- atlas
- cartography
- database
- + 6
- JavaScript
- Java
- HTML
- + 9
OBiBa Agate
Agate is a web application that offers users related services to the OBiBa software stack.
- authentication
- Epidemiology
- Java
- FreeMarker
- Vue
- + 7
OBiBa Mica
Mica is OBiBa's software application that is used to create data web portals for large-scale epidemiological studies or multiple-study consortia.
- euCanSHare, software integration
- Java
- JavaScript
- FreeMarker
- + 6
OBiBa Opal
Opal is OBiBa's core data repository application for epidemiological studies.
- euCanSHare, software integration
- Java
- Vue
- JavaScript
- + 8
Ocean Networks Canada
By bringing data to the surface, ONC provides ocean intelligence to scientists, governments, organizations, and citizens. Ocean data are archived, processed and made freely available via ONC’s data management system, Oceans 3.0.
OCTSEG
Analyze retinal optical coherence tomography images.
- Image processing
- MATLAB
- M
One button compute
Web application for running a CWL workflow on a bunch of files.
- Optimized data handling
- Workflow technologies
- Python
- HTML
- Common Workflow Language
OpenDA
Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.
- Optimized data handling
- Java
- Fortran
- Python
- + 22
Open Matrices Stimulus Set (omss)
omss is a Python package for generating matrix reasoning puzzles, inspired by Raven's Progressive Matrices. It allows users to generate an unlimited number of customizable puzzles across a range of difficulty levels by setting rules for visual elements.
- Intelligence
- Matrices
- python
- + 1
- Python
OpenSim Creator
A UI for building OpenSim models
- biomechanical engineering
- opensim
- Simulation
- C++
- GLSL
- CMake
- + 6
Orange3 Argument Mining Add-on
This open-source Python package facilitates the processing, analysis, and visualization of argument corpora. Additionally, It offers user-friendly GUIs integrated into the Orange3 scientific workflow platform, enabling non-programmers to utilize its capabilities.
- Argument mining
- Natural Language Processing
- python
- + 1
- Python
Orange3 Story Navigator
Add-on providing quantitative textual story analysis based on principles in narrative psychology
- narrative psychology
- orange3
- text analysis
- Python
Orange Hackathon
Orange modules for text processing in the project What Works When for Whom
- Jupyter Notebook
- Python
- CSS
- + 2
Osmium
Start, stop and monitor applications remotely via a HTTP interface.
- High performance computing
- Java
- API Blueprint
oTree Demo Experiments
oTree demo experiment: Public goods game
- behavioral research
- oTree
- Workflow technologies
- HTML
- Python
- JavaScript
- + 1
oTree Development Environment
A Docker environment for programming against multiple oTree server
- oTree
- Makefile
- Shell
- Dockerfile
oTree Waiting Room
A load balancer for oTree servers.
- oTree
- JavaScript
- HTML
- Shell
Overture Arranger
Data can be messy, let Arranger organize it for you.
- JavaScript
- TypeScript
- CSS
- + 3
Overture Data Management System
Overture is a collection of open-source, extendable solutions for big-data genomic science that research institutions and individual researchers can use to support their work.
- authentication
- cloud storage
- genomics
- + 2
- Java
- Shell
- Dockerfile
- + 1
Overture Ego
A stateless authorization and user management service.
- Data Indexing
- Elasticsearch Automation
- Java
- Shell
- Makefile
- + 1
Overture Maestro
Organizing your distributed data into one index.
- Data Indexing
- Elasticsearch Automation
- Java
- Groovy
- Makefile
- + 1
Overture Score
Transfer data quickly and easily to and from any cloud-based storage system.
- Cancer Genomics
- Cloud Storage & Transfer
- Java
- Shell
- Makefile
- + 1
Overture Song
Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.
- Cancer Genomics
- Metadata Management
- Metadata Validation
- Java
- Python
- Shell
- + 7
PACTE
A Collaborative Electronic Text Annotation Platform
- collaborative
- corpus
- disambiguation
- + 5
PanTools-pipeline-v4
General purpose Snakemake pipeline for PanTools v4.
- Data Analysis
- genomics
- pangenomics
- Python
- Dockerfile
- Shell
paradigma
A toolbox to calculate digital biomarkers for wearable sensors in Parkinson's disease.
- Python
- Jupyter Notebook
parareal
This package runs the parareal algorithm on a black-box simulator. Parallelisation is managed through Dask.
- High performance computing
- Numerical analysis
- CSS
- Jupyter Notebook
- Python
- + 5
ParticleDA.jl
Julia package to perform data assimilation with particle filters, supporting both thread-based parallelism and distributed processing using MPI.
- Data assimilation
- Julia Package
- Particle filter
- Julia
- Jupyter Notebook
- Shell
PartitionedArrays.jl
This package provides distributed (a.k.a. partitioned) vectors and sparse matrices like the ones needed in distributed finite differences, finite volumes, or finite element computations.
- GPU
- High performance computing
- Julia Package
- Julia
- Shell
PattyAnalytics
Library for aligning and scaling one point cloud to an other.
- Big data
- Point Cloud
- Python
PBI
An open-source python package to identify breakthrough innovations within patents.
- Breakthrough innovations
- jupyter notebooks
- parallel computing
- + 2
- Python
pdbtbx-ts
Want to parse Protein Data Bank files in JavaScript
- Optimized data handling
- Rust
- JavaScript
- TypeScript
Petri Nets on Hyperledger
Decentralized coordination of multi-domain workflows using Hyperledger Fabric blockchain and Petri nets.
- Blockchain
- hyperledger
- Petri net
- + 1
- JavaScript
- CSS
- HTML
- + 1
PhysicalConstants.jl
Collection of fundamental physical constants with uncertainties. It supports arbitrary-precision constants.
- Julia Package
- Physics
- Julia
PlanEO Dashboard
Provides an interactive interface for visualizing geographical data relevant to the MINE-DD project, including pathogen distribution, risk factors, and demographic analysis through both point data and raster overlays.
- Data Analysis
- Demographic Analysis
- Geographic Visualization
- + 8
- Svelte
- TypeScript
- Python
- + 5
Platalea
Platalea contains deep neural network architectures for modeling spoken language from multiple sources at once: audio, and simultaneously images, text or video. This can be used to learn about what different context sources add to the language acquisition process.
- Python
protein-detective
Python package to detect proteins in EM density maps.
- Python
protein-quest
Python package to search/retrieve/filter proteins and protein structures
- Python
PSRDADA python
If you want to do astrophysics in python, this could come in handy. Connect to a radiotelescope and process data in real-time.
- Cython
- Python
- Makefile
pybacting
Python wrapper around Bacting.
- Biology
- Chemistry
- python
- Python
Pycoeus
Pycoeus is a command-line tool and python package designed for exploration of multiband geospatial datasets. It lets the user iteratively train and retrain segmentation models in seconds. A combination of Deep learning and traditional machine learning is used, leveraging the best of both methods.
- deep learning
- gis
- Machine learning
- + 2
- Python
PyELSEPA
Python wrapper for ELSEPA, a numeric code for computing elastic scattering cross-sections for electrons and positrons off neutral atoms.
- Python
- Dockerfile
Pyspextools
Pyspextools is a collection of python tools for the SPEX X-ray spectral fitting package.
- Astrophysics
- Software
- Spectroscopy
- Python
PyStemmusScope
A python package for running the STEMMUS-SCOPE model
- Jupyter Notebook
- Python
- Shell
- + 1
pyTAMS
A physics-agnostic implementation of the Trajectory-Adataptive Multilevel Splitting (TAMS) algorithm for predicting transition probability in bi-stable dynamic problems.
- Rare event simulations
- Python
- Shell
python-pcl
Use the industry-standard Point Cloud Library from within Python.
- Big data
- High performance computing
- Python
- C++
- Makefile
- + 2
PyXenon
Python wrapper for the Xenon programming interface to various compute and storage resources.
- Python
- Shell
- Batchfile
pyZacros
A Python library to handle Kinetic Monte Carlo codes.
- Python
- Shell