All software

asreview-simulation

Command line interface to simulate an ASReview analysis using a variety of prior sampling strategies, classifiers, feature extractors, queriers, balancers, and stopping rules, all of which can be configured to run with custom parameterizations.

asrlitcompare

A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.

AstroImages.jl

Visualization of astronomical images in Julia

AstroLib.jl

Bundle of small astronomical and astrophysical routines.

Atlascine

Atlascine is an open-source, online mapping platform dedicated to bringing stories and maps closer together. This tool combines multimedia storytelling with digital mapping technologies to enable researchers to create, interact with and study spatial relationships within and between stories.

AttentionLayer.jl

Implements the Attention mechanism in Julia as a modular Lux layer

auto-doc-engine

AST-driven research-document compiler for typed Markdown, structural-change evidence, diagnostics, artifact records and lineage, SARIF interchange, multi-format synchronization, and RO-Crate packaging

Axiom-0

Dependency-free Python reference implementation for explicit data contracts, canonicalization, measurable state transitions, KL-divergence checks, validation, and reproducible repository boundaries

haddock3-webapp

Web app to build haddock3 configuration and run it.

i-VRESSE bartender

Bartender is a middleware web service to schedule jobs on various infrastructures.

BeamSchemeV1

Assists in extracting 1D profiles from 2D datasets. Calculates over 90 different parameters.

BGC Viewer

A viewer for biosynthetic gene cluster data.

bibr

bibliography rodent 🦫 - a modern scientific extraction pipeline.

BIOMERO

a scalable and extensible image analysis framework

bird-cloud-gnn

bird-cloud-gnn is a Python package that helps generate a graph representation from point cloud data and fits graph neural networks for classification problem

Bistromath

BistroMath is designed as add-on to the measuring software of water phantom systems used in radiotherapy.

boatswain

Boatswain is a simple build system for docker images. It is especially useful when you have multiple docker images that depend on each other.

Brei

a minimalist workflow system in Python

BridgeDbR

R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.

BridgeDb Webservice

REST API for identifier mapping

BroadLineRegions.jl

A fast and flexible toolkit for modeling the broad-line region (BLR) in Julia.

c3s-magic-wps

Web Processing Service for Climate Data Analysis in the MAGIC project.

CAExplorer.jl

A widget that lets you explore the dynamics of a particular cellular automaton that operates on a 5x5 stencil. We use this CA in the context of the carbonate platform modelling toolkit CarboKitten.jl.

Canadian Advanced Network for Astronomical Research (CANFAR)

The Canadian Advanced Network for Astronomy Research (CANFAR) is a consortium that serves data-intensive storage, access, and processing needs of university groups and centers engaged in astronomy research.

Canadian Writing Research Collaboratory (CWRC)

CWRC aims to make digital research methods broadly accessible, and to develop an active community of researchers engaged in exploring the potential of collaboration online.

CanDIG CHORD

CHORD is a project to build a federated, Canadian, national data service for privacy- sensitive genomic and related health data. It allows the technologies and services being built by CanDIG and its international partners to be made available to the Canadian health research community more broadly.

CanGeo Project

The goal of this project is to provide a web service providing inland waterbodies initially available on GeoBase and updated using the most recent Landsat-8 imagery.

CanWIN

CanWIN (Canadian Watershed Information Network) is the data centre for the Centre for Earth Observation Science (CEOS). We support research and education, and inform management, policy and evidence based decision-making from the Nelson River Watershed to the Arctic.

CarboKitten.jl

A toolkit for forward modelling of stratigraphic record of carbonate platforms, written in Julia.

Carbon Budget Explorer (CABE)

Web application to visualize countries' carbon emission pathways under various views on fairness.

caselawnet

Caselawnet constructs citation networks from collections of Dutch case law.

CAT

CAT is a collection of tools designed for the construction of various chemical compounds.

ccglib

The Complex Common GEMM Library (ccglib) provides mixed-precision matrix-matrix multiplication kernels for complex data.

CDF2Medmij-Mapping-tool

The CDF2Medmij-Mapping-tool facilitates the seamless transformation of cohort data into MedMij-compliant FHIR formats, enabling the harmonization of diverse datasets within a federated learning infrastructure.

Ceiba

Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.

ceiba-cli

command line interface to interact to interact with the ceiba web server

Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

CERR

CERR (pronounced 'sir'), stands for Computational Environment for Radiological Research. CERR is MATLAB based software platform for developing and sharing research results using radiation therapy treatment planning and imaging informatics.

cerulean

A Python 3 library for talking to HPC clusters and supercomputers.

Cesium-ncWMS

Web Application that visualizes data stored in the NetCDF format on a globe.

cffconvert GitHub Action

GitHub action to validate CITATION.cff files, and convert to other citation formats using the dockerized version of cffconvert

CHAMP-EU

The Cornell-Holland Ab-initio Materials Package (CHAMP) is a quantum Monte Carlo suite of programs for electronic structure calculations. The code is developed by Claudia Filippi and Saverio Moroni, with significant contributions by Ravindra Shinde, N. Renaud, V. Azizi, E. Landinez, and S. Shepard.

check-deps

This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.

Chemical Analytics Platform

Chemical Analytics Platform is a freely available Virtual Machine encompassing tools, databases, and KNIME workflows.

China Agentic Observatory

Bilingual, source-grounded observatory of China's AI and agent ecosystem across history, policy, standards, research, open source, infrastructure, industry, applications, evaluation, safety, and governance

CIL

Provides modular optimisation framework for prototyping reconstruction methods. Tools for loading, preprocessing, visualising tomographic data.

CitRe

Cityblocks

Python utility to generate local climate zone (LCZ) tiles for rendering in 3D in QGIS