All software
holodev
A command-line tool written in shell script to simplify the creation of LXC Linux containers.
- (Makefile)
- (Shell)
HORTON
HORTON is a Helpful Open-source Research Tool for N-fermion systems, written primarily in the Python programming language. The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost.
- electronic structure theory
- quantum chemistry
- (Assembly)
- (BitBake)
- (C)
- + 6
HPGEM
hpGEM is a C++ partial differential equation solver. It is intended for Discontinuous Galerkin Finite Element Methods, but can also do normal (conforming) Finite Element Methods and Finite Volume.
- Finite Element
- High performance computing
- (C)
- (C++)
- (CMake)
- + 6
htr-quality-classifier
A package to determine the quality of a a digitized text, from a handwritten script or scanned print (HTR/OCR output).
- Machine learning
- python
- Text analysis & natural language processing
- ("Jupyter Notebook")
- (Python)
- (Shell)
iBridges
A wrapper around the python-irodsclient to allow for easy interaction with iRODS servers for research software engineers to integrate compute wokflows and data management.
- Data management
- iRODS
- Metadata Management
- + 1
- (Dockerfile)
- ("Jupyter Notebook")
- (Python)
- + 2
iBridges-GUI
A graphical user interface to iRODS employing the iBridges python package.
- Data management
- Graphical user interface
- iRODS
- + 1
- (Python)
ICD_GEMs.jl
A Julia package that allows to translate ICD-9 into ICD-10 codes and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).
- CDC
- Clinical Data
- Coding Scheme
- + 12
- (Julia)
ICGC ARGO
Harmonising world-wide efforts to reduce the global burden of cancer
- Cancer Genomics
- Data portal
ICOS CP python library
This package, available at pip as icoscp, allows you to have direct access to data objects from the ICOS Carbon Portal where a "Preview" is available. It provides easy access to data objects hosted at the ICOS Carbon Portal. By using this library you can load data files directly into memory.
- Big data
- Data Analysis
- python
- + 2
- (Just)
- (Python)
ICOS data repository
The ICOS Portal app is a FAIR linked data repository for metadata and data. In first instance primarily targeted at hosting the high quality data from ICOS. The repository is optimized for machine to machine communication. Instances in production now for ICOS, Swedish SITES and ICOS Cities networks.
- Data
- Inter-operability & linked data
- metadata
- + 3
- (HTML)
- (Java)
- (JavaScript)
- + 3
I-EMIC
An Implicit Earth system Model of Intermediate Complexity
- ESM
- oceanography
- (C)
- (C++)
- (CMake)
- + 6
iEnvironment
iEnvironment is a web-based, extensible and distributed data management platform and user gateway for integrated environmental monitoring and modelling (IEMM).
- Benthic Macroinvertebrates
- Channel Morphology
- Channel Stability
- + 8
IMAGE-LAND-LUE
This is a free and open source software (FOSS) Python version of the simulation model IMAGE-land, the land cover change model from the IMAGE 3.1 Integrated Assessment Model (IAM). Most, but not all, capabilities of the original model are included.
- geospatial
- integrated assessment model
- land use change
- + 2
- (Python)
imas2xarray
Imas2xarray is a python library for reading IMAS data in hdf5 format into xarray.
- fusion-reactor
- hdf5
- python
- + 1
- ("Jupyter Notebook")
- (Python)
- (Shell)
INA tool
A tool for visualising and analysing Institutional Statements
- Multilayer Networks
- Visualization
- (CSS)
- (HTML)
- (JavaScript)
- + 1
infra-stemmus-scope
Set-up and run STEMMUS-SCOPE on SURF research cloud (SRC)
- Workflow technologies
Internet Archive scraper
The Internet Archive scraper is a workflow for collecting webpages archived in Internet Archive's Wayback Machine. It is designed to run serverless on Amazon's AWS infrastructure.
- AWS
- Internet Archive
- python
- + 2
- (HCL)
- (Python)
- (Shell)
Introduction to deep learning lesson
This lesson gives an introduction to deep learning.
- deep learning
- lesson
- python
- ("Jupyter Notebook")
- (Makefile)
- (Python)
- + 1
Islandora
Islandora is an open-source software framework designed to help institutions and organizations and their audiences collaboratively manage, and discover digital assets using a best-practices framework.
- Drupal
- Fedora
- open source
- + 1
- (CSS)
- (JavaScript)
- (PHP)
- + 1
i-VRESSE jupyterlab haddock3 configurator
Jupter Lab extension to create/edit haddock3 configuration file.
- Inter-operability & linked data
- (CSS)
- (JavaScript)
- (Python)
- + 1
JASP modules app
A web application that allows you to search/filter all the available JASP modules and install them.
- (CSS)
- (HTML)
- (TypeScript)
jQUDT
Java Library to deal with QUDT units and conversions between them. QUDT is an ontology for "Quantities, Units, Dimensions and Data Types in OWL and XML"
- Inter-operability & linked data
- Java
JUBE
JUBE is a generic, lightweight, configurable environment to run, monitor and analyse application execution in a systematic way. This software is commonly used to execute benchmarks and complex workflows on High Performance Computers, but is not limited to these systems.
- Benchmarking
- High performance computing
- HPC
- + 4
- (C)
- (Python)
- (Shell)
JupyterDaskOnSLURM
A Dask cluster and a Jupyter server on a SLURM system
- Big data
- High performance computing
- jupyter notebooks
- + 1
- (Python)
- (Shell)
JupyterLab dataset browser for THREDDS
A browser that allows you to include NetCDF data stored in THREDDS catalog into a Jupyter Notebook.
- Big data
- Optimized data handling
- (CSS)
- (JavaScript)
- ("Jupyter Notebook")
- + 2
JURI
JURI (Jülich Reporting Interface) provides a template-driven fully client-based web framework to visualise data lists and associated data graphs.
- (CSS)
- (Handlebars)
- (HTML)
- + 5
Kernel Float
C++ Header-only library for CUDA that simplifies working with vector types and reduced precision floating-point arithmetic in GPU code.
- AI
- Big data
- GPU
- + 1
- (C)
- (C++)
- (CMake)
- + 3
Containers for the KM3NeT Rucio deployment
This repository contains configuration files and scripts to build KM3NeT-specific container images used to deploy Rucio for KM3NeT.
- Big data
- High performance computing
KMM
KMM is a lightweight C++ middleware for accelerated computing.
- GPU
- High performance computing
- (C++)
- (CMake)
- (Cuda)
- + 1
kunefe
A Python package that helps users run containerized applications on HPC systems
- Agent-based modeling
- Apptainer
- containers
- + 5
- (Dockerfile)
- (Python)
- (Shell)
LARA Lab Automation
Open source toolset for lab automation
- laboratory automatization
- (Dockerfile)
- (HTML)
- ("Jupyter Notebook")
- + 4
Laserfarm
Laserfarm: Laserchicken Framework for Applications in Research in Macroecology. Leverage Laserchicken in distributed fashion to use continental scale point cloud datasets for research.
- (Dockerfile)
- ("Jupyter Notebook")
- (Python)
Ldot
Workflow and participant registration support
- GDPR
- participant information
- storage
- + 2
leakybucket
A Python BMI leaky bucket model 🪣
- (Dockerfile)
- ("Jupyter Notebook")
- (Python)
LHAPDF
LHAPDF (The Les Houches Accord PDFs) is a standardised library for accessing parton distribution functions (PDFs) in high-energy physics. It provides a common interface to a wide range of PDF sets, enabling consistent and reproducible predictions in collider simulations and analyses.
- Collider physics
- Deep Inelastic Scattering
- Interpolation
- + 1
- (C++)
- (Cython)
- (M4)
- + 2
libGPML
libGPML is an open-source Java library for working with Graphical Pathway Markup Language (GPML).
- Graphical Pathway Markup Language
- Java
- (HTML)
- (Java)
- (TeX)
LifelinesCSV2CDF
This tool converts Lifelines cohort study data from CSV to CDF/JSON, a format used in the MyDigiTwin project. Lifelines tracks health data over time, but variables are often scattered across files, making analysis difficult. CDF organizes data per participant, enabling FHIR/MedMij-compliant analysis
- Data Harmonization
- Lifelines
- MyDigiTwin
- (Python)
- (Shell)
LimeSurvey
LimeSurvey is a free and open-source online survey platform in 80+ countries worldwide. It offers features like conditional logic, question branching, customizable templates, multilingual support, and GDPR compliance.
- questionnaire
- survey
- (Batchfile)
- (CSS)
- (Hack)
- + 11
LLview
LLview is a set of software components to monitor clusters that are controlled by a resource manager and a scheduler system.
- High performance computing
- HPC
- Monitoring
- + 2
- (Perl)
- (Python)
- (Shell)
lofar-ld
Publish LOFAR catalog as Linked Data.
- Inter-operability & linked data
- (Makefile)
Lofar Predictive Maintenance
Software tool to cluster outputs of different baselines within a specific observation. There are often over 1500 baselines in a single observation which takes a lot of time to inspect. This tool makes inspecting output of baselines more productive.
Lokum
Deploy GlusterFS, Docker, Spark and JupyterHub services on bare-metal cluster.
- Big data
- High performance computing
- Optimized data handling
- (Dockerfile)
- (HCL)
- (Python)
- + 2
LombScargle.jl
Compute Lomb-Scargle periodogram, suitable for unevenly sampled data. It supports multi-threading
- astronomy
- Astrophysics
- Julia Package
- (Julia)
LXCat
An open-access website for collecting, displaying, and downloading electron and ion scattering cross sections for modeling low temperature plasmas.
- Optimized data handling
- (CSS)
- (Dockerfile)
- (JavaScript)
- + 2
LXCat schema
Type, JSON schema and validator for cross section set used in low-temperature plasma community.
m4ma
An R package containing C++ implementations to speed up the simulation and parameter estimation of the Predictive Pedestrian model.
- geospatial
- High performance computing
- Real time data analysis
- (C)
- (C++)
- (R)
Magic Castle
Magic Castle aims to recreate the HPC user experience in public clouds.
- CERN
- HPC
- research software
- + 1
- (HCL)
- (Python)
- (Shell)
marzipan
Deploying clusters of VMs on bare metal using OpenNebula, provisioning, and running services made easy by fully configurable scalable automation
- High performance computing
- (Dockerfile)
- (Python)
- (Shell)
- + 1