All software
NPLinker Web Application
This is the NPLinker web application, developed with Plotly Dash. It enables interactive visualization of NPLinker predictions and is designed to be run locally or in a containerized environment.
- Data mining
- Genome
- Metabolome
- + 2
- Python
- CSS
- Dockerfile
- + 1
Ersilia Model Hub
The Ersilia Model Hub is an open source platform to serve AI/ML models for infectious disease drug discovery.
- AI
- Chemistry
- Drug discovery
- + 1
- Python
- Jupyter Notebook
- Dockerfile
- + 1
hyphe
A research-driven web-crawler aimed at building, curating and categorizing a corpus of web actors and the network graph of hyperlinks connecting them.
- crawling
- Networks
- python
- + 1
- JavaScript
- Python
- HTML
- + 3
fsbrain
The fsbrain package provides visualization of neuroimaging data in R. The plots produced by fsbrain can be integrated into R notebooks or written to high-quality bitmap image files, ready for publication.
- Computational Neuroscience
- Visualization
- R
- Dockerfile
- Shell
Research Software Directory
A content management system for research software, which promotes the visibility, reuse, and impact of research software.
- FAIR
- Research Software Impact
- Software Citation
- TypeScript
- Java
- PLpgSQL
- + 7
4CAT Capture & Analysis Toolkit
The 4CAT Capture and Analysis Toolkit provides modular data capture & analysis for a variety of social media platforms. Its goal is to make the capture and analysis of data from these platforms accessible to people through a web interface, without requiring any programming or web scraping skills.
- Big data
- python
- Social media
- + 1
- Python
- JavaScript
- HTML
- + 4
BIAS
A toolbox for detecting structural bias in continuous optimization heuristics.
- Bias
- Metaheuristics
- optimization
- + 1
- Jupyter Notebook
- Python
- Dockerfile
- + 1
AHN2 pointcloud viewer
A web application able to visualize the AHN2 point cloud data of the Netherlands.
- Big data
- Real time data analysis
- Visualization
- JavaScript
- HTML
- CSS
- + 1
Inseq
Interpretability for sequence generation models 🐛 🔍
- deep learning
- Explainable AI
- generative models
- + 2
- Python
- Makefile
- Dockerfile
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- Fortran
- C++
- Python
- + 4
DeepRank2
DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces or single-residue missense variants. This package is an improved and unified version of three previously developed packages: DeepRank, DeepRank-GNN and DeepRank-Mut.
- Cancer vaccine
- Convolutional Neural Network
- Deep Learning Framework
- + 5
- Python
- Jupyter Notebook
- TeX
- + 1
argopy
Argopy is a python library dedicated to Argo data access, manipulation and visualisation for standard users as well as Argo experts.
- Data Analysis
- Data processing
- Earth and Environmental Sciences
- + 3
- Python
- CSS
- Shell
- + 1