Software | Research Software Directory

Software supporting: Analysis of natural variation in photosynthesis in a panel of Brassicaceae species

Brassicaceae
High-throughput phenotyping
Hirschfeldia incana
+ 1

Other
Python
Markdown

1

0

Software supporting: RNA-Seq analysis of Brassicaceae species under different irradiances

Brassicaceae
Hirschfeldia incana
photosynthesis
+ 1

Python
R
Other
+ 1

1

0

Software tool associated to the master thesis: Multi-Objective optimisation in grid-shell design

grasshopper
Grid-Shell Design
multi objective optimization
+ 1

1

0

Software underlying PhD thesis: AI in the Sky - Advancing Wildlife Survey Methods in Africa with Deep Learning and Aerial Imagery.

Artificial intelligence
deep learning
Monitoring
+ 2

Python
Markdown

1

0

Source code and data for the experiments presented in Deep Reinforcement Learning for Active Wake Control

active wake control
deep learning
Reinforcement learning

4

0

Source code for: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy for Dental Calculus

dental calculus
Fourier-transform infrared spectroscopy (FTIR)
metagenomics
+ 2

5

0

Source code for the MSc thesis: Multi-leader Adaptive Cruise Control Systems considering Sensor Measurement Uncertainties based on Deep Reinforcement Learning

Adaptive Cruise Control
Deep Reinforcement Learning
Kalman filter
+ 4

1

0

Source code for the paper "Constructing Phylogenetic Networks via Cherry Picking and Machine Learning"

Cherry Picking
Heuristic
Hybridization
+ 2

Python
Other
Markdown
+ 1

4

0

Source code for the publication: Learning safety in model-based Reinforcement Learning using MPC and Gaussian Processes

Gaussian Processes
Learning-based Model Predictive Control
Safe Reinforcement Learning

1

0

Source code of the jEULYNX prototype framework

DSL
EULYNX
FormaSig
+ 2

1

0

Source code underlying the publication: Topology-Based Reconstruction Prevention for Decentralised Learning

decentralised learning
graph girth
privacy-preserving summation
+ 2

Matlab
Markdown
Other

3

0

spacevlbi

Python package for simulating and optimising a space-based VLBI mission

astronomy
Spacecraft Optimisation
Space Mission Design
+ 1

Python
Other
Markdown
+ 1

1

0

spacy-extensions

Code for Threat Intelligence Processing - Unleashing the Real Power of Natural Language Processing for Cyber Threat Intelligence

Cyber Threat Intelligence
Natural Language Processing
Security

Python
Other
JSON
+ 1

9

0

Specification Translator: Artifact for iFM 2023 paper "Joining Forces! Reusing Contracts for Deductive Verifiers through Automatic Translation"

Annotations
Deductive verification
Specifications
+ 1

3

0

Specification Translator: Tool to Translate Specifications for Deductive Verifiers

Annotations
Deductive verification
Semantics
+ 3

Other

3

0

Speed Robust Scheduling Supplemental Material

Combinatorial optimization
Computer assisted proof
Data Structures
+ 1

6

0

SpinControl.jl, a numerical package written in Julia

Monte-Carlo
Noisy Quantum Simulation
Open System
+ 2

1

0

spurious_sentience

Software and data underlying the publication: "Position: Stop Making Unscientific AGI Performance Claims"

Artificial General Intelligence
Artificial intelligence
interpretability
+ 1

Other
TeX
Julia
+ 2

4

0

Structural dynamics model to find the dynamic behaviour as a response of the wave loading of the Tidal Bridge in Indonesia

Dynamic structure
Hydraulic loading
Morison equation
+ 1

1

0

structure_calibration_sparse_data

Code: Structural Calibration for Supply Chain Simulation Models with Sparse Data

Simulation
sparse data
structure
+ 2

YAML
Python
Other
+ 2

1

0

Stumblemeter: App and MATLAB code

Accelerometer
gyroscope
Machine learning
+ 3

3

0

Supplementary code to the paper: Flexible Enterprise Optimization With Constraint Programming

Constraint programming (Computer science)
deep learning
Enterprise engineering
+ 2

2

0

Supplementary data for the paper 'From A to B with Ease: User-Centric Interfaces for Shuttle Buses'

Micro-mobility
Shuttle bus
User Interface
+ 1

5

0

Supporting software for the paper: Conformance in the Railway Industry: Single-Input-Change Testing a EULYNX Controller

Conformance testing
Model-based testing
Programmable logic controllers
+ 7

3

0

TESTER GHG abatement option selection Tool

Concept design
emission abatement technologies
Greenhouse gas (GHG) emmisions
+ 2

1

0

The model and the data part of the master thesis “Integrating Reuse in MaTrace Models: An implementation and evaluation”

Cobalt
Master thesis
Material flow analysis (MFA)
+ 2

1

0

The role of Foreign Exchange Reserve on Foreign Public Debt in Ethiopian Economy: ARDL Model Approach

Ethiopia
foreign debt reserves

4

0

topological_SB_matching

Code underlying: Topological Schrödinger Bridge Matching

distribution matching
generative models
graph and simplicial complex
+ 1

Other
Jupyter Notebook
Python
+ 3

1

0

Trained CNN model to predict performance of an LPM thruster from the 32 x 32 px image of its microchannel cross-section

convolution neural network
Thruster

1

0

TUD R Cafe Plot-a-thon: 4TU.RD stats

data visualization
plot-a-thon
Statistics

Other
JSON
R
+ 2

1

0

TWORIT

TWORIT: Theoretical solver and Waveguide Optimization for Radiating Irregular Tapered-Cones – A tool for calculating the S parameters and Far Fields of a cascaded cylindrical waveguide structure

Conical Horn Antenna
Electromagnetics
Mode Matching
+ 2

Other
Matlab
Markdown

3

0

UNetGE software and it User Manual

grain extraction
grain size extraction
image analysis
+ 3

4

0

UNITY: VR Package of a plausible future of bicycle assembly scenario in SAMXL

Future of Work
Futures
Future scenario
+ 8

3

0

Urdf-Environments for OpenAI-Gym

OpenAI-Gym
pybullet
Robotics systems
+ 1

1

0

ValueMonitor software

Ethics of technology
Moral values
Topic Modelling
+ 1

2

0

Value Preferences Estimation and Disambiguation in Hybrid Participatory Systems - code

Active Learning
Natural Language Processing
NLP
+ 1

Python
JSON
Other
+ 1

4

0

Vertical Conflict Resolution in Layered Airspace with Reinforcement Learning using the BlueSky Open Air Traffic Simulator

Air traffic management (ATM)
BlueSky
Conflict detection and resolution
+ 3

1

0

Video Annotation Software

Artificial intelligence
process modeling study
Process modelling

3

0

VSIDS learning code: "Learning Variable Activity Initialisation for Lazy Clause Generation Solvers"

GCN
Graph Convolutional Networks
lazy clause generation
+ 5

3

0

Wake-informed Lifting Line Theory: Example Code

Blade Loading Distributions
Experimental Measurement Analysis
Lifting Line
+ 3

1

0

xcrisp

Data and code underlying the publication: X-CRISP: Domain-Adaptable and Interpretable CRISPR Repair Outcome Prediction

CRISPR
DNA repair
explainability
+ 3

2

0

Abinit

Abinit is a software package based on density functional theory for calculating the properties of solids.

Fortran
Python
M4
+ 15

3

0

addFeatures

addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features.

Image processing
mass spectrometry

R

1

0

admtools

Estimate age-depth models in geology and use them to transform various types of data (fossil ages, phylogenetic trees, trait evolution of lineages) between the time domain and the stratigraphic domain.

Age-depth modeling
Geochronology
Sedimentology
+ 1

R

1

0

Aiida-CHAMP

The aiida-champ plugin to handle the CHAMP workflow using AiiDA.

python
workflow

Python
Shell

1

0

aiproteomics

Generate and compare deep learning models for generating synthetic mass spectral libraries

Machine learning
mass spectrometry
phosphoproteomics
+ 1

Jupyter Notebook
Python
Shell

1

0

Allelic Variation Explorer

If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.

Visualization

Python
Dockerfile
AngelScript

2

0

MPI-AMRVAC

MPI-AMRVAC is a parallel adaptive mesh refinement framework aimed at solving (primarily hyperbolic) partial differential equations by a number of different numerical schemes. The emphasis is on (near) conservation laws and on shock-dominated problems in particular.

Fortran
Python
Shell
+ 2

0

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