Software | Research Software Directory

Supporting software for the paper: Conformance in the Railway Industry: Single-Input-Change Testing a EULYNX Controller

Conformance testing
Model-based testing
Programmable logic controllers
+ 7

3

0

TESTER GHG abatement option selection Tool

Concept design
emission abatement technologies
Greenhouse gas (GHG) emmisions
+ 2

1

0

The model and the data part of the master thesis “Integrating Reuse in MaTrace Models: An implementation and evaluation”

Cobalt
Master thesis
Material flow analysis (MFA)
+ 2

1

0

The role of Foreign Exchange Reserve on Foreign Public Debt in Ethiopian Economy: ARDL Model Approach

Ethiopia
foreign debt reserves

4

0

topological_SB_matching

Code underlying: Topological Schrödinger Bridge Matching

distribution matching
generative models
graph and simplicial complex
+ 1

Other
Jupyter Notebook
Python
+ 3

1

0

Trained CNN model to predict performance of an LPM thruster from the 32 x 32 px image of its microchannel cross-section

convolution neural network
Thruster

1

0

TUD R Cafe Plot-a-thon: 4TU.RD stats

data visualization
plot-a-thon
Statistics

Other
JSON
R
+ 2

1

0

TWORIT

TWORIT: Theoretical solver and Waveguide Optimization for Radiating Irregular Tapered-Cones – A tool for calculating the S parameters and Far Fields of a cascaded cylindrical waveguide structure

Conical Horn Antenna
Electromagnetics
Mode Matching
+ 2

Other
Matlab
Markdown

3

0

UNetGE software and it User Manual

grain extraction
grain size extraction
image analysis
+ 3

4

0

UNITY: VR Package of a plausible future of bicycle assembly scenario in SAMXL

Future of Work
Futures
Future scenario
+ 8

3

0

Urdf-Environments for OpenAI-Gym

OpenAI-Gym
pybullet
Robotics systems
+ 1

1

0

ValueMonitor software

Ethics of technology
Moral values
Topic Modelling
+ 1

2

0

Value Preferences Estimation and Disambiguation in Hybrid Participatory Systems - code

Active Learning
Natural Language Processing
NLP
+ 1

Python
JSON
Other
+ 1

4

0

Vertical Conflict Resolution in Layered Airspace with Reinforcement Learning using the BlueSky Open Air Traffic Simulator

Air traffic management (ATM)
BlueSky
Conflict detection and resolution
+ 3

1

0

Video Annotation Software

Artificial intelligence
process modeling study
Process modelling

3

0

VSIDS learning code: "Learning Variable Activity Initialisation for Lazy Clause Generation Solvers"

GCN
Graph Convolutional Networks
lazy clause generation
+ 5

3

0

Wake-informed Lifting Line Theory: Example Code

Blade Loading Distributions
Experimental Measurement Analysis
Lifting Line
+ 3

1

0

xcrisp

Data and code underlying the publication: X-CRISP: Domain-Adaptable and Interpretable CRISPR Repair Outcome Prediction

CRISPR
DNA repair
explainability
+ 3

2

0

Abinit

Abinit is a software package based on density functional theory for calculating the properties of solids.

Fortran
Python
M4
+ 15

3

0

addFeatures

addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features.

Image processing
mass spectrometry

R

1

0

admtools

Estimate age-depth models in geology and use them to transform various types of data (fossil ages, phylogenetic trees, trait evolution of lineages) between the time domain and the stratigraphic domain.

Age-depth modeling
Geochronology
Sedimentology
+ 1

R

1

0

Aiida-CHAMP

The aiida-champ plugin to handle the CHAMP workflow using AiiDA.

python
workflow

Python
Shell

1

0

aiproteomics

Generate and compare deep learning models for generating synthetic mass spectral libraries

Machine learning
mass spectrometry
phosphoproteomics
+ 1

Jupyter Notebook
Python
Shell

1

0

Allelic Variation Explorer

If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.

Visualization

Python
Dockerfile
AngelScript

2

0

ANNUBeS

ANNUBeS is a deep learning framework meant to generate synthetic data and train on them neural networks aimed at developing and evaluating animals' training protocols in neuroscience.

neural networks
Neuroscience

Python

2

0

ArcticConnect

ArcticConnect is a network-enabled platform for realizing geospatial referencing of information about the arctic system derived from research, education, and private sector activities in the arctic and subarctic.

Arctic
Polar

HTML

1

0

Arctic Web Map

Arctic Web Map (AWM) is an Arctic-specific web mapping tool allowing researchers to customize map projections for scientifically accurate visualization and analysis, a function that is critical for arctic research but missing in existing web mapping platforms.

data collection
python
wildlife

Python
JavaScript
CSS
+ 1

2

0

ARISE biocloud

The Biocloud is the underlying digital back-end infrastructure of the ARISE program.

1

0

Arpra

Arpra is a C library for analyzing the propagation of numerical error in arbitrary precision IEEE-754 floating-point computations.

Affine Arithmetic
Arbitrary Precision
Interval Arithmetic
+ 2

C
Makefile
M4

1

0

asreview-simulation

Command line interface to simulate an ASReview analysis using a variety of prior sampling strategies, classifiers, feature extractors, queriers, balancers, and stopping rules, all of which can be configured to run with custom parameterizations.

AI
ASReview
Automated Systematic Review
+ 4

Python

2

0

asrlitcompare

A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.

ASReview
inter-rater reliability
literature screening
+ 1

HTML
C++
JavaScript
+ 14

2

0

AstroImages.jl

Visualization of astronomical images in Julia

astronomy
Astrophysics
Julia Package
+ 1

Julia

2

0

AstroLib.jl

Bundle of small astronomical and astrophysical routines.

astronomy
Astrophysics
Julia Package

Julia

1

0

Atlascine

Atlascine is an open-source, online mapping platform dedicated to bringing stories and maps closer together. This tool combines multimedia storytelling with digital mapping technologies to enable researchers to create, interact with and study spatial relationships within and between stories.

atlas
geovisualization
Mapping stories
+ 3

JavaScript
CSS
HTML

1

0

AttentionLayer.jl

Implements the Attention mechanism in Julia as a modular Lux layer

Julia Package
Machine learning
Scientific machine learning

Julia

1

0

haddock3-webapp

Web app to build haddock3 configuration and run it.

TypeScript
CSS
JavaScript
+ 2

2

0

i-VRESSE bartender

Bartender is a middleware web service to schedule jobs on various infrastructures.

Workflow technologies

Python
Dockerfile
Mako

3

0

BestieTemplate.jl

BestieTemplate.jl is a template focused on best practices for package development in Julia.

best practices
julia
template

Julia

9

0

BGC Viewer

A viewer for biosynthetic gene cluster data.

Vue
TypeScript
Python
+ 4

2

0

BIOMERO

a scalable and extensible image analysis framework

biaflows
bioimaging
biomero
+ 9

Python
Shell
Dockerfile

1

0

bird-cloud-gnn

bird-cloud-gnn is a Python package that helps generate a graph representation from point cloud data and fits graph neural networks for classification problem

Classification
Graph Neural Network
Machine learning
+ 2

Python

4

0

boatswain

Boatswain is a simple build system for docker images. It is especially useful when you have multiple docker images that depend on each other.

containers
docker

Python
Dockerfile

2

0

Brei

a minimalist workflow system in Python

python
Workflow technologies

Python

1

0

BridgeDbR

R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.

persistent identifiers
Statistics

R
TeX
HTML

0

BridgeDb Webservice

REST API for identifier mapping

persistent identifiers
REST API
webservice

Java
HTML
JavaScript
+ 1

2

0

BroadLineRegions.jl

A fast and flexible toolkit for modeling the broad-line region (BLR) in Julia.

astronomy
Astrophysics

Julia
TeX

0

c3s-magic-wps

Web Processing Service for Climate Data Analysis in the MAGIC project.

Python
Makefile
Shell
+ 1

5

0

Canadian Advanced Network for Astronomical Research (CANFAR)

The Canadian Advanced Network for Astronomy Research (CANFAR) is a consortium that serves data-intensive storage, access, and processing needs of university groups and centers engaged in astronomy research.

authenticated
CANFAR
condor
+ 6

2

0

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