All software

433-480 of 1324

Online COP heuristic learning code: "Online Learning of Variable Ordering Heuristics for Constraint Optimisation Problems"

constraint optimisation problem
Gecode
Machine learning
+ 3

P1-data-combination-code

Code to paper "Changing Sea Level, Changing Shorelines: Integration of Remote Sensing Observations at the Terschelling Barrier Island"

coastline
Remote sensing
sea level
+ 1

("Jupyter Notebook")
(large-text-file)
(Markdown)
+ 1

patient-interaction-detection

Python code to detect interaction of medical personnel with the operating table from surveillance videos

2D human poses
Action recognition
Operating table interaction
+ 3

(JSON)
(large-text-file)
(Markdown)
+ 2

Pbox Code, supporting the publication: Macro-element refinement schemes for THB-splines: Applications to Bézier projection and structure-preserving discretizations

adaptive refinement
finite element method
isogeometric analysis
+ 1

(Markdown)
(Matlab)
(Other)
+ 2

ProbabilisticValidation

Source code underlying the publication: Privacy-Preserving Data Aggregation with Probabilistic Range Validation

privacy-preserving summation
range validation
secure multi-party computation
+ 1

(Markdown)
(Matlab)

propeller_airspeed_sensor

Data and Code for Unmanned Aerial Vehicles airspeed estimation using propeller feedback.

BEM
ESC feedback
flight data
+ 4

(Julia)
(Markdown)
(Matlab)
+ 1

Software accompanying the publication: Surrogate DC Microgrid Models for Optimization of Charging Electric Vehicles under Partial Observability

DC microgrid
Electric vehicles (EV),
Optimization Algorithms

Software supporting the article: Community Detection for Temporal Weighted Bipartite Networks

Bipartite Network
Bipartite Networks
Community Detection
+ 4

("Jupyter Notebook")
(Markdown)
(Other)
+ 1

Soil suitability maps for agriculture for the province Noord-Brabant (Netherlands) created with WaterVissionAgriculture and scripts to generate input data and to run the model WWL-tabel

Agriculture
crop production
soil suitability
+ 2

Source code for: Assessing the Validity of a Calcifying Oral Biofilm Model as a Suitable Proxy for Dental Calculus

dental calculus
Fourier-transform infrared spectroscopy (FTIR)
metagenomics
+ 2

supervised-learning-pwa-mpc

Software underlying the publication: Learning-based model predictive control for piecewise affine systems with feasibility guarantees

Feasibility
Hybrid Systems
Machine learning
+ 1

(Markdown)
(Matlab)
(Other)
+ 1

swinging-kite

Swinging Motion of a Kite with Suspended Control Unit Flying Turning Manoeuvres (Code)

Airborne Wind Energy (AWE)
Flight data analysis
Kite power
+ 2

(Markdown)
(Other)
(Python)
+ 1

ADHTEB

ADHTEB (Alzheimer’s Disease Harmonization Text Embedding Benchmark) is a Python package designed to evaluate the performance of text-embedding models in harmonizing variable descriptions from diverse cohorts in the context of Alzheimer’s disease.

alzheimers disease
benchmark
large language models
+ 1

(Python)

Analizo

Analizo is a free, multi-language, extensible source code analysis. It supports the extraction and calculation of a fair number of source code metrics, generation of dependency graphs, and software evolution analysis.

Software Evolution
Source Code Metrics
Static Analysis

(C)
(C#)
(C++)
+ 7

anonymoUUs

Python package to replace identifiable strings in multiple files and folders at once

de-identification
python
text

("Jupyter Notebook")
(Python)

Baklava

Deploys a Kubernetes cluster and big data services on the cloud.

Big data
High performance computing
Optimized data handling

(Dockerfile)
(HCL)
(Python)
+ 2

BenchmarkRecovery

This project simulates Landsat data and evaluates the performance of recovery indicators with respect to data and disturbance characteristics.

BestieTemplate.jl

BestieTemplate.jl is a template focused on best practices for package development in Julia.

best practices
julia
template

(Julia)
(Python)

BIRCH

BIRCH is a powerful framework for organizing and using bioinformatics. BIRCH comes with hundreds of commonly-used tools, and allows you to customize your BIRCH site by adding new ones.

bioinformatics
BLAST
genomics
+ 3

BrainBrowser

BrainBrowser is an open source JavaScript library exposing a set of web-based 3D visualization tools primarily targetting neuroimaging

3D
brainbrowser
neurology
+ 2

(CSS)
(HTML)
(JavaScript)
+ 1

byteparsing

Parser library for reading custom binary files from Python.

Big data
Multi-scale & multi model simulations
Optimized data handling

(Batchfile)
(C++)
(CSS)
+ 5

CBRAIN

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.

CBRAIN
cluster
Data Analysis
+ 6

(CSS)
(HTML)
(JavaScript)
+ 3

ChemTools

ChemTools is a free and open source Python library for interpreting the results of quantum chemistry calculations.

atoms in molecules
conceptual dft
density matrices kinetic energy density
+ 2

(Python)

dCacheFS

Python file-system interface for dCache storages.

Data
Inter-operability & linked data
Optimized data handling
+ 1

("Jupyter Notebook")
(Python)

Emo-spectre

Interactive visualization and exploration of multi modal time-series data and video

Visualization
Workflow technologies

("Common Workflow Language")
(Dockerfile)
(JavaScript)
+ 5

emvoice

A Python package for computing emotion expression-related features from speech signals.

Emotion expressions
python
Speech processing

(Python)
(Shell)

Lysander

Find people on Twitter given a small initial set of interesting people.

Text analysis & natural language processing

(Python)

GameBus FHIR Layer

Enable FHIR service for GameBus and beyond

Data Harmonization
FHIR
healthcare
+ 1

(Dockerfile)
(Java)
(Shell)

Geodisy

Geodisy is a research data discovery tool that harvests information from existing research data repositories and displays applicable records onto a map-based search interface.

geospatial
metadata
research data

(CSS)
(HTML)
(Java)
+ 6

IRIDA

Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.

genomics
infectious disease

(CSS)
(Dockerfile)
(HTML)
+ 6

ISAAC Chrome extension

Chrome Web Extension for support of the NWO ISAAC platform. This extension is not endorsed or developed by the NWO.

BibTeX
CITATION.cff
DataCite
+ 1

(CSS)
(HTML)
(JavaScript)
+ 1

i-VRESSE workflow-builder

Need to write a complex config file then the i-VRESSE workflow builder might be the tool for you.

Workflow technologies

(CSS)
(HTML)
(JavaScript)
+ 3

Kernel Launcher

Dynamically compile GPU kernels and launch them easily and safely using C++ magic. Tight integration with Kernel Tuner results in blazing fast CUDA code that is maintainable and performance portable.

auto-tuning
CUDA
GPU
+ 2

(C)
(C++)
(CMake)
+ 3

LORIS

Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an OPEN SOURCE framework for storing and processing behavioural, clinical, neuroimaging and genetic data.

Computational Neuroscience
database
neuroimaging
+ 3

(CSS)
(GLSL)
("Go Template")
+ 10

Mahiru

A prototype for a federated, distributed data sharing and processing system.

Data processing
Data Sharing
Policies
+ 1

(C)
(Dockerfile)
(Makefile)
+ 2

Massive PotreeConverter

Use parallel processing to quickly convert large point cloud data sets to the format used by the Potree viewer.

Big data
Optimized data handling

(Python)

Mass Spec Studio

A user-friendly, fully extensible framework for mass spectrometry analysis.

mass spectrometry
proteins

MMSODA Toolbox for MATLAB

MATLAB toolbox for global optimization and state estimation of dynamic models using distributed computing.

(Batchfile)
(C)
(CSS)
+ 5

Motus Wildlife Tracking System

The Motus Wildlife Tracking System (Motus) is an international collaborative research network that uses coordinated automated radio telemetry to facilitate research and education on the ecology and conservation of migratory animals.

conservation science
movement ecology
wildlife tracking

mzRecal

mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.

mass spectrometry
proteomics

(Dockerfile)
(Go)
(Makefile)
+ 2

NPLinker

Microbial natural products data mining by integrating genomics and metabolomics data

Data processing
multi-omics integration

(Makefile)
(Mustache)
(Python)
+ 2

Open Computational Multiphysics

OpenCMP is a computational multiphysics software package based on the finite element method

Computational Fluid Dynamics (CFD)
computational Multiphysics
diffuse interface method
+ 3

(Python)
(TeX)

OpenMS

OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.

C++
mass spectrometry
metabolomics
+ 1

(Batchfile)
(C)
(C++)
+ 15

OpenPNM

OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.

Pore network modeling

(Makefile)
(Python)

openPSTD

openPSTD is a Python-based research software that allows efficient and detailed calculation of sound propagation in a 2D built environment. It is especially useful as a reference tool for other developed software on acoustic sound propagation.

Acoustics
GPU
python

(C)
(C++)
(CMake)
+ 3

PAVICS

PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.

analysis
climate
Climate change
+ 5

(CSS)
(HTML)
(JavaScript)
+ 3

PhenoTips

PhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders.

API
deep phenotyping
genogram
+ 6

(Batchfile)
(CSS)
(HTML)
+ 4

Plus Toolkit

Toolkit for data acquisition, pre-processing, calibration, and real-time streaming of imaging, position tracking, and other sensor data for medical applications.

3D Slicer
electromagnetic tracking
image capture
+ 7

(Batchfile)
(C)
(C++)
+ 2