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PBI

An open-source python package to identify breakthrough innovations within patents.

Breakthrough innovations
jupyter notebooks
parallel computing
+ 2

Python

pdbtbx-ts

Want to parse Protein Data Bank files in JavaScript

Optimized data handling

Rust
JavaScript
TypeScript

Petri Nets on Hyperledger

Decentralized coordination of multi-domain workflows using Hyperledger Fabric blockchain and Petri nets.

Blockchain
hyperledger
Petri net
+ 1

JavaScript
CSS
HTML
+ 1

Platalea

Platalea contains deep neural network architectures for modeling spoken language from multiple sources at once: audio, and simultaneously images, text or video. This can be used to learn about what different context sources add to the language acquisition process.

Python

PowerSensor3

PowerSensor is a low-cost, custom-built device that measures the instantaneous power consumption of GPUs and other devices at a high time resolution.

GPU
High performance computing

C
C++
Python
+ 3

PSRDADA python

If you want to do astrophysics in python, this could come in handy. Connect to a radiotelescope and process data in real-time.

Cython
Python
Makefile

PyELSEPA

Python wrapper for ELSEPA, a numeric code for computing elastic scattering cross-sections for electrons and positrons off neutral atoms.

Python
Dockerfile

Pyspextools

Pyspextools is a collection of python tools for the SPEX X-ray spectral fitting package.

Astrophysics
Software
Spectroscopy

Python

PyStemmusScope

A python package for running the STEMMUS-SCOPE model

Jupyter Notebook
Python
Shell
+ 1

pyTAMS

A physics-agnostic implementation of the Trajectory-Adataptive Multilevel Splitting (TAMS) algorithm for predicting transition probability in bi-stable dynamic problems.

Rare event simulations

Python
Shell

python-pcl

Use the industry-standard Point Cloud Library from within Python.

Big data
High performance computing

Python
C++
Makefile
+ 2

PyXenon

Python wrapper for the Xenon programming interface to various compute and storage resources.

Python
Shell
Batchfile

pyZacros

A Python library to handle Kinetic Monte Carlo codes.

Python
Shell

qalcore

Core Library of the Quantum Application Lab

python
Quantum Computing

Jupyter Notebook
Python
Shell

qc2

Quantum Computing for Quantum Chemistry

quantum chemistry
Quantum Computing

Jupyter Notebook
Python
Shell

QMCBlip

QMCBlip allows to couple Quantum Monte Carlo Simulations with Machine Learning Force Fields to accelerate Molecular Dynamics simulations

Python

QMCTorch

Use and design neural network ansatz wave function for real-space quantum Monte Carlo simulations of molecular systems.

Computational Chemistry
GPU
High performance computing
+ 2

Python
TeX

quafing

Questionnaire analysis using Fisher Information Non-Parametric Embedding. Explore high-dimensional continuous and discrete questionnaire data sets.

Data Analysis
python
Statistics

Python
Jupyter Notebook
Shell

Quantum Newton Raphson

The Quantum Newton Raphson package allows to leverage quantum computing routines to accelerate the Newton-Raphson algorithm.

Numerical analysis
Quantum Computing

Python
Shell

qubols

qubols allows to solve linear system using a QUBO approach that can be deployed on quantum annealers

Numerical analysis
Quantum Computing

Jupyter Notebook
Python
Shell

qubops

qubops allows to solve polynomial system of equations using a QUBO approach that can be deployed on quantum annealers

Numerical analysis
Quantum Computing

Jupyter Notebook
Python
Shell

QUICKLB

QUICKLB is a very efficient library that sacrifices optimality for speed. It shines in distributed applications that have unpredictable unbalanced computational peaks in their domains.

Computational Fluid Dynamics (CFD)
Fortran
High performance computing
+ 2

Fortran
Python
CMake

Radiam

Radiam helps researchers keep track of their data, regardless of where it is stored. There are multiple components working together, and most of them run within Docker containers.

metadata
RDM

Python
JavaScript
HTML
+ 3

rcoins

Identify continuous lines in a spatial network.

geospatial
Networks
R

R
Python

ReaxPro framework ontology

This application ontology is dedicated to the ReaxPro framework for the multi-scale modeling of catalytic materials.

Multi-scale & multi model simulations
ontology
Workflow technologies

ReaxPro wrappers

This repository is a collection of wrappers used in the ReaxPro project. It holds wrappers for the Amsterdam Modeling Suite (AMS) and Zacros.

Chemistry
Multiscale modeling
Multi-scale & multi model simulations

Python
Dockerfile
Shell

REE-HDSC

Software developed in the project REE-HDSC (Recognizing Extracted Entities for the Historical Database Suriname Curacao, 2023-2024) of the Radboud University Nijmegen and the Netherlands eScience Center.

hand-written text recognition
named entity Recognition

Jupyter Notebook
Python
HTML

Remote BMI

Remote BMI allows you to communicate with Basic Model Interface enabled numerical models using a RESTful API

Basic Model Interface
BMI
julia
+ 4

Julia
Python
R
+ 3

Research Lifecycle Approach using Islandora

Islandora 8 is an open-source software framework designed to help organizations collaboratively manage and discover digital assets using a best-practices, standards-based preservation framework.

Research Portal for Secure Data Discovery, Access, and Collaboration

A Research Portal that can address these different usage models, while serving as website and gateway for authorized researchers to capture, query, and visualize patient data; communicate, collaborate and share datasets; and access support and training resources. platforms.

Collaboration
Data Access Request
Data Sharing
+ 3

RESTful APE

RESTfull API for the APE (Automated Pipeline Explorer) library.

Java
Program synthesis
REST API
+ 1

Java
Dockerfile

ReSurfEMG

ReSurfEMG is an open source collaborative python library for analysis of respiratory electromyography (EMG). The library includes functions for pre-processing, analysis and machine learning.

electrophysiology
EMG
Machine learning
+ 1

Jupyter Notebook
Python
TeX
+ 3

ReSurfEMG-dashboard

A dashboard for visualizing and analyzing respiratory EMG signal, making use of the ReSurfEMG library

EMG
Time Series Analysis
Visualization

Jupyter Notebook
Python

Review Argumentation at Scale

This package contains a scalable pipeline to perform argument reasoning on a dataset of product reviews, to identify the highest quality ones. By tuning both lossy and lossless parameters, it is possible to tune the pipeline to foster the accuracy of the computation or its speed.

Python
Prolog
Shell
+ 1

ROOT

An open-source data analysis framework used by high energy physics and others.

C++
C
JavaScript
+ 26

Rosemary

Rosemary is a plugin for YASGUI (Yet Another SPARQL GUI), facilitating creation of SPARQL queries without requiring knowledge of SPARQL.

Data
database
Data management
+ 10

JavaScript
CSS
HTML
+ 1

Rucio policy package for KM3NeT

Package with custom policies for the Rucio instance of KM3NeT.

Big data
Data management

Satsense

A Python library for land use classification based in satellite images.

Image processing
Machine learning

Jupyter Notebook
Python

scikit-talk

Scikit-talk is an open-source toolkit for processing collections of real-world conversational speech in Python. The toolkit aims to facilitate the exploration of large collections of transcriptions and annotations of conversational interaction.

conversation
language corpora
turn-taking

Python
Shell

GitHub action to set up apptainer

GitHub action for setting up apptainer in a Continous Integration job

High performance computing

TypeScript
Shell
JavaScript

SFINCS-BMI-server

grpc4bmi wrapper around Delteras/sfincs BMI for use with eWaterCycle

Jupyter Notebook
C++
Dockerfile
+ 1

ShareTrait website

Share Trait web application is a web application that allows users to deposit trait data in the Share Trait database.

Data
Inter-operability & linked data
metadata

SLURM CLI-API Proxy

SLURM CLI-API Proxy client is a tool designed to bridge existing applications and scripts that rely on the SLURM CLI. The tool mimics traditional SLURM CLI commands, translating them into REST API calls, enabling seamless integration of existing tools with external SLURM workload managers.

Arvados
Proxy
SLURM

Python
Shell
Go

slurm-mongo

A package to download slurm usage from a supercomputer and upload it to MongoDB

Big data
High performance computing
SLURM

Python

Slurm time on Jupyter

Display Slurm job remaining time in Jupyter top bar

High performance computing
jupyter notebooks
SLURM

Python
TypeScript
JavaScript
+ 1

SmartPlay

Android OS Wear Application to measure children's activity when playing.

Psychology
Real time data analysis
Visualization

Kotlin
Svelte
TypeScript
+ 2

SMP decision tree

SMP decision tree is a questionnaire for creating a Software Management Plan (SMP).

metadata
Project management
software sustainability

Shell
Python

speckcn2

SpeckleCn2Profiler revolutionizes satellite communication, combining SCIDAR and AI. By accurately estimating turbulence strength and refining signals, it ensures reliable performance in any environment. Dive into our repository and join the quest to transform optical links.

Scientific machine learning

Python
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