All software
KNIME PLANTS
A node for the KNIME workflow system that allows you to use the PLANTS protein-ligand docking algorithm.
- Workflow technologies
- (Java)
- (Mustache)
KNIME Python node archetype
Want to write your own KNIME node wrapping a Python library. Then use the KNIME Python node archetype to generate a node skeleton repository with sample code
- Big data
- Workflow technologies
- (Java)
- (Python)
KNIME Python wrapper
If you are developing a KNIME node which calls some Python code, then the KNIME Python wrapper can help you.
- Workflow technologies
- (Java)
- (Python)
KNIME molecule viewer nodes
A 3D viewer for large molecules for the KNIME workflow system.
- Visualization
- Workflow technologies
- (CSS)
- (Java)
- (JavaScript)
KNIME ss-TEA node
A node for the KNIME workflow systems that allows you to identify which residue position in a big protein sequence alignment is specific to ligand binding.
- Workflow technologies
- (Java)
sv-callers
Highly portable parallel workflow to detect structural variants in cancer genomes.
- Big data
- High performance computing
- Workflow technologies
- (Python)
- (Shell)
APE
A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.
- Java
- Program synthesis
- Workflow technologies
- (ANTLR)
- ("Common Workflow Language")
- (Java)
LinkAhead
Open Source Research Data Management Software
- Data
- ETL
- Inter-operability & linked data
- + 4
- (ANTLR)
- (Java)
- (Makefile)
- + 2
MDStudio
A tool to run molecular dynamics workflows.
- High performance computing
- Real time data analysis
- Workflow technologies
- (CSS)
- (Dockerfile)
- (HTML)
- + 5
nanomesh
Python workflow tool for generating meshes from 2D and 3D microscopy image data
- Image processing
- Visualization
- Workflow technologies
- ("Jupyter Notebook")
- (PowerShell)
- (Python)
- + 1
Noodles
Task-based parallel programming model in Python that offers the same intuitive interface when running complex workflows on your laptop or on large computer clusters.
- High performance computing
- Workflow technologies
- (HTML)
- ("Jupyter Notebook")
- (Lua)
- + 2
SyGMa
SyGMa provides fast and lightweight predictions of human metabolites to support discovery scientists design better and safer drugs
- Workflow technologies
- (Python)