All software

1Filter

Order by

Keywords

Program languages

Licenses

25-36 of 41

KNIME molecule viewer nodes

A 3D viewer for large molecules for the KNIME workflow system.

Visualization
Workflow technologies

Java
JavaScript
CSS

KNIME ss-TEA node

A node for the KNIME workflow systems that allows you to identify which residue position in a big protein sequence alignment is specific to ligand binding.

Workflow technologies

Java

KNIME Testflow

Allows you to test KNIME nodes automatically using JUnit.

Workflow technologies

Java

LinkAhead

Open Source Research Data Management Software

Data
ETL
Inter-operability & linked data
+ 4

Java
Shell
Python
+ 2

MDStudio

A tool to run molecular dynamics workflows.

High performance computing
Real time data analysis
Workflow technologies

Python
CSS
TypeScript
+ 5

nanomesh

Python workflow tool for generating meshes from 2D and 3D microscopy image data

Image processing
Visualization
Workflow technologies

Jupyter Notebook
Python
Shell
+ 1

Noodles

Task-based parallel programming model in Python that offers the same intuitive interface when running complex workflows on your laptop or on large computer clusters.

High performance computing
Workflow technologies

Jupyter Notebook
Python
Shell
+ 2

NPLinker eScience Workshop GenMetMine Materials

These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining: https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are available in a format facilitating its reuse.

Data mining
genomics
Inter-operability & linked data
+ 4

One button compute

Web application for running a CWL workflow on a bunch of files.

Optimized data handling
Workflow technologies

Python
HTML
Common Workflow Language

QMflows

Construction and efficient execution of computational chemistry workflows.

Multi-scale & multi model simulations
Workflow technologies

Python
Jupyter Notebook
Shell

ReaxPro framework ontology

This application ontology is dedicated to the ReaxPro framework for multi-scale modelling of catalytic materials.

Multi-scale & multi model simulations
ontology
Workflow technologies

RESTful APE

RESTfull API for the APE (Automated Pipeline Explorer) library.

Java
Program synthesis
REST API
+ 1

Java
Dockerfile