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34 software items. Page 1 of 3. 12 items per page. 1 filters active.
1-12 of 34

haddock3

Haddock3 (High Ambiguity Driven protein-protein DOCKing) is a modular software for for the integrative modeling and refinement of biomolecular complexes.

  • biomolecular complexes
  • docking
  • energetics
  • + 4
  • (BitBake)
  • (C)
  • (C++)
  • + 11
12
6935

FAIR Data Point

RESTful web service that enables data owners to expose their data sets using rich machine-readable metadata.

  • Big data
  • Inter-operability & linked data
  • (Dockerfile)
  • (Makefile)
  • (Python)
6
146

Paired omics data platform

If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.

  • Inter-operability & linked data
  • (CSS)
  • (Dockerfile)
  • (HTML)
  • + 3
2
126

grlc

Builds a web API from SPARQL queries hosted on GitHub to accessing triple store data.

  • garlic
  • Inter-operability & linked data
  • (CSS)
  • (Dockerfile)
  • (HTML)
  • + 4
3
83

3D-e-Chem Virtual Machine

A freely available Virtual Machine encompassing tools, databases, and workflows for cheminformaticians, including new resources developed for ligand binding site comparisons and GPCR research.

  • Inter-operability & linked data
  • Workflow technologies
  • (Shell)
  • (Smarty)
2
42

LitStudy

Explore scientific literature using Python from the comfort of a Jupyter notebook

  • Inter-operability & linked data
  • Text analysis & natural language processing
  • Visualization
  • (HTML)
  • (Python)
7
40

LinkAhead

Open Source Research Data Management Software

  • Data
  • Electronic Lab Notebook
  • ETL
  • + 9
  • (ANTLR)
  • (C++)
  • (CSS)
  • + 9
6
25

Citation File Format

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

  • FAIR
  • Inter-operability & linked data
  • (Python)
2
21

QTLTableMiner++

Extract gene-trait associations from scientific literature

  • Inter-operability & linked data
  • Text analysis & natural language processing
  • (Java)
  • (Shell)
3
20

pbg-ld

Access integrated data on genes and associated traits in plants

  • Data Analysis
  • genomics
  • Inter-operability & linked data
  • (Dockerfile)
  • (Makefile)
  • (PLpgSQL)
  • + 2
4
16

nanopub

The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.

  • Inter-operability & linked data
  • (JavaScript)
  • (Python)
  • (Shell)
3
12

SIGA.py

Make genome annotations semantically interoperable

  • Inter-operability & linked data
  • (Python)
2
11