All software
haddock3
Haddock3 (High Ambiguity Driven protein-protein DOCKing) is a modular software for for the integrative modeling and refinement of biomolecular complexes.
- biomolecular complexes
- docking
- energetics
- + 4
- Python
- Fortran
- C++
- + 10
FAIR Data Point
RESTful web service that enables data owners to expose their data sets using rich machine-readable metadata.
- Big data
- Inter-operability & linked data
- Python
- Makefile
- Dockerfile
Paired omics data platform
If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.
- Inter-operability & linked data
- TypeScript
- JavaScript
- HTML
- + 3
grlc
Builds a web API from SPARQL queries hosted on GitHub to accessing triple store data.
- garlic
- Inter-operability & linked data
- Python
- HTML
- TeX
- + 4
3D-e-Chem Virtual Machine
A freely available Virtual Machine encompassing tools, databases, and workflows for cheminformaticians, including new resources developed for ligand binding site comparisons and GPCR research.
- Inter-operability & linked data
- Workflow technologies
- Shell
- Smarty
LitStudy
Explore scientific literature using Python from the comfort of a Jupyter notebook
- Inter-operability & linked data
- Text analysis & natural language processing
- Visualization
- Python
- HTML
Citation File Format
The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.
- FAIR
- Inter-operability & linked data
- Python
QTLTableMiner++
Extract gene-trait associations from scientific literature
- Inter-operability & linked data
- Text analysis & natural language processing
- Java
- Shell
pbg-ld
Access integrated data on genes and associated traits in plants
- Data Analysis
- genomics
- Inter-operability & linked data
- PLpgSQL
- Shell
- Python
- + 2
LinkAhead
Open Source Research Data Management Software
- Data
- ETL
- Inter-operability & linked data
- + 4
- Java
- Shell
- Python
- + 2
nanopub
The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.
- Inter-operability & linked data
- Python
- Shell
- Batchfile
SIGA.py
Make genome annotations semantically interoperable
- Inter-operability & linked data
- Python