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Cover image for haddock3

haddock3

Haddock3 (High Ambiguity Driven protein-protein DOCKing) is a modular software for for the integrative modeling and refinement of biomolecular complexes.

  • biomolecular complexes
  • docking
  • energetics
  • + 4
  • Python
  • Fortran
  • C
  • + 9
12
5679
Cover image for FAIR Data Point

FAIR Data Point

RESTful web service that enables data owners to expose their data sets using rich machine-readable metadata.

  • Big data
  • Inter-operability & linked data
  • Python
  • Makefile
  • Dockerfile
6
107
Cover image for Paired omics data platform

Paired omics data platform

If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.

  • Inter-operability & linked data
  • TypeScript
  • JavaScript
  • HTML
  • + 3
2
100
Cover image for grlc

grlc

Builds a web API from SPARQL queries hosted on GitHub to accessing triple store data.

  • garlic
  • Inter-operability & linked data
  • Python
  • HTML
  • TeX
  • + 4
3
78
Cover image for 3D-e-Chem Virtual Machine

3D-e-Chem Virtual Machine

A freely available Virtual Machine encompassing tools, databases, and workflows for cheminformaticians, including new resources developed for ligand binding site comparisons and GPCR research.

  • Inter-operability & linked data
  • Workflow technologies
  • Shell
  • Smarty
2
33
Cover image for Citation File Format

Citation File Format

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

  • FAIR
  • Inter-operability & linked data
  • Python
2
21
Cover image for LitStudy

LitStudy

Explore scientific literature using Python from the comfort of a Jupyter notebook

  • Inter-operability & linked data
  • Text analysis & natural language processing
  • Visualization
  • Python
  • HTML
7
20
Cover image for QTLTableMiner++

QTLTableMiner++

Extract gene-trait associations from scientific literature

  • Inter-operability & linked data
  • Text analysis & natural language processing
  • Java
  • Shell
3
19
Cover image for pbg-ld

pbg-ld

Access integrated data on genes and associated traits in plants

  • Data Analysis
  • genomics
  • Inter-operability & linked data
  • PLpgSQL
  • Shell
  • Python
  • + 2
4
16
Cover image for LinkAhead

LinkAhead

Open Source Research Data Management Software

  • Data
  • ETL
  • Inter-operability & linked data
  • + 4
  • Java
  • Shell
  • Python
  • + 2
6
12
Cover image for SIGA.py

SIGA.py

Make genome annotations semantically interoperable

  • Inter-operability & linked data
  • Python
2
11
Cover image for recipy

recipy

Effortless provenance tracking in Python

  • Inter-operability & linked data
  • Optimized data handling
  • Python
  • HTML
  • Jupyter Notebook
  • + 2
2
8