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Cover image for MUSCLE3

MUSCLE3

MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.

  • High performance computing
  • Multi-scale & multi model simulations
  • Fortran
  • C++
  • Python
  • + 2
4
6
Cover image for PSSMGen

PSSMGen

Generates consistent PSSM and PDB files for protein-protein complexes

  • Big data
  • High performance computing
  • Optimized data handling
  • Python
  • Makefile
2
6
Cover image for Lightning

Lightning

Lightning: Fast data processing using GPUs on distributed platforms

  • Big data
  • GPU
  • High performance computing
  • Rust
  • C++
  • Python
2
4
Cover image for LUE

LUE

LUE is software for storing and manipulating large amounts of information for large numbers of objects. The software is useful, and currently mainly used, in the context of environmental modelling of biological and physical systems, represented by agents and fields.

  • Agent-based modeling
  • environmental modelling
  • field based modelling
  • + 6
  • C++
  • Python
  • CMake
  • + 6
3
4
Cover image for Noodles

Noodles

Task-based parallel programming model in Python that offers the same intuitive interface when running complex workflows on your laptop or on large computer clusters.

  • High performance computing
  • Workflow technologies
  • Jupyter Notebook
  • Python
  • Shell
  • + 2
9
4
Cover image for Xenon gRPC server

Xenon gRPC server

Run applications remotely via a gRPC interface.

  • High performance computing
  • Java
3
4
Cover image for MOTrainer

MOTrainer

Measurement Operator Trainer for data assimilation purposes.

  • Data assimilation
  • High performance computing
  • Machine learning
  • + 2
  • Jupyter Notebook
  • Python
  • TeX
  • + 1
7
2
Cover image for Baklava

Baklava

Deploys a Kubernetes cluster and big data services on the cloud.

  • Big data
  • High performance computing
  • Optimized data handling
  • Python
  • HCL
  • Dockerfile
  • + 2
1
1
Cover image for Rocket

Rocket

Rocket is a framework for efficient execution of all-pair applications on heterogeneous platforms.

  • Big data
  • GPU
  • High performance computing
  • + 1
  • Java
  • Cuda
  • C++
  • + 2
1
1
Cover image for Rucio deployment for KM3NeT

Rucio deployment for KM3NeT

This repository contains the Rucio deployment for KM3NeT. It can be used as an example of how to deploy Rucio.

  • Big data
  • High performance computing
    2
    1
    Cover image for self-hosted runners

    self-hosted runners

    Collection of resources to set up GitHub runners on self-hosted infrastructure

    • High performance computing
    • Shell
    • Dockerfile
    5
    1
    Cover image for snakemake-wrf

    snakemake-wrf

    A snakemake workflow to run WRF, including pre- and postprocessing. See our blog post for a detailed description.

    • geospatial
    • High performance computing
    • python
    • + 1
    • Jupyter Notebook
    • Python
    • Shell
    2
    1