Lourens Veen

1-10 of 10

AMUSE

Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.

High performance computing
Multi-scale & multi model simulations
Workflow technologies

AMPL
C
Fortran
+ 25

MUSCLE3

MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.

High performance computing
Multi-scale & multi model simulations

Fortran
C++
Python
+ 2

scriptcwl

Create CWL workflows by writing a simple Python script.

Workflow technologies

Python
Common Workflow Language

xtas

the eXtensible Text Analysis Suite

Text analysis & natural language processing

Python
Shell
Java

Tissue Simulation Toolkit

Tissue Simulation Toolkit (TST) 2.0 is an efficient C++ library for two-dimensional simulations of Glazier and Graner's Cellular Potts model (Glazier and Graner, 1993). It is suitable for simulations with live visualization as well as batch simulations on clusters.

Cellular Potts Model
Chemotaxis
Embryology
+ 1

C++
Python
Cuda
+ 5

sv-gen

Highly portable parallel workflow to generate artificial genomes with structural variants.

Big data
High performance computing
Workflow technologies

Python
Shell

Mahiru

A prototype for a federated, distributed data sharing and processing system.

Data processing
Data Sharing
Policies
+ 1

Python
Makefile
Dockerfile
+ 2

yatiml

Python library for YAML type inference, schema checking and syntactic sugar.

Python
Shell

Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

High performance computing
Optimized data handling
Workflow technologies

Python
Common Workflow Language
Dockerfile
+ 2

cerulean

A Python 3 library for talking to HPC clusters and supercomputers.

High performance computing
SFTP
SLURM
+ 2

Python
Shell
Dockerfile