Wageningen University & Research
University and research institute specializing in agriculture and life sciences.
Allelic Variation Explorer
If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.
- Visualization
- (AngelScript)
- (Dockerfile)
- (Python)
classmodel/form
Form component that renders a JSON schema using Solid UI components.
CLASS-web
Implementation of the Chemistry Land-surface Atmosphere Soil Slab (CLASS) model that runs entirely in the browser. For more information on CLASS, see https://classmodel.github.io/.
- web service
- (CSS)
- (HTML)
- (JavaScript)
- + 2
DALES
DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.
- (C)
- (CMake)
- (Fortran)
- + 8
EC-Earth
A European community Earth-System Model
- Climate change
- Climate modeling
- High performance computing
- + 1
fm128-radar
A python library to write ascii based fm128_radar files to be used in WRFDA
- (Python)
HyperCanny
Finds edges in high-dimensional data using the Canny algorithm.
- Data Analysis
- edge detection
- High performance computing
- (C)
- (C++)
- (Makefile)
- + 3
MAGMa
MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.
- Big data
- Visualization
- (CSS)
- (Cython)
- (Dockerfile)
- + 5
MS2DeepScore
Deep learning based similarity measure of mass spectrometry data.
- ("Jupyter Notebook")
- (Python)
NPLinker
Microbial natural products data mining by integrating genomics and metabolomics data
- Data processing
- multi-omics integration
- (Makefile)
- (Mustache)
- (Python)
- + 2
Paired omics data platform
If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.
- Inter-operability & linked data
- (CSS)
- (Dockerfile)
- (HTML)
- + 3
PanTools
PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.
- Data Analysis
- Gene classification
- pangenomics
- (Java)
- (Python)
- ("Roff Manpage")
- + 1