ANNUBeS is a deep learning framework meant to generate synthetic data and train on them neural networks aimed at developing and evaluating animals' training protocols in neuroscience.

neural networks
Neuroscience

(Python)

ARISE biocloud

The Biocloud is the underlying digital back-end infrastructure of the ARISE program.

(Dockerfile)
("Jupyter Notebook")
(Python)
+ 1

bird-cloud-gnn

bird-cloud-gnn is a Python package that helps generate a graph representation from point cloud data and fits graph neural networks for classification problem

Classification
Graph Neural Network
Machine learning
+ 2

(Python)

CoeusAI

The CoeusAI QGIS plugin is designed for exploration of multiband geospatial datasets. It lets the user iteratively train and retrain segmentation models in seconds. A combination of Deep learning and traditional machine learning is used, leveraging the best of both methods.

deep learning
gis
Machine learning
+ 2

(Python)

Compass-school

This Python implementation tries to model school choice and resulting school segregation based on the work of Schelling (1971) and Stoica & Flache (2014).

Agent-based modeling

(HTML)
(Python)

Cross-perspective Topic Modeling

An application that uses cross-perspective topic modeling to extract topics and opinions from text and provides insight into how they change over time.

Text analysis & natural language processing

("Jupyter Notebook")
(Python)
(Shell)

eEcology Annotation Tool

Visualize and annotate GPS measurements of bird movements.

Inter-operability & linked data
Visualization

("API Blueprint")
(CSS)
(Dockerfile)
+ 5

eEecology Classification

Automatic classification of accelerometer data using a supervised learning approach.

Machine learning

(Batchfile)
(CSS)
(HTML)
+ 3

eEcology-SMS-reciever

If you have birds flying around carrying UvA-BiTS trackers, then this software can save the SMS messages containing the bird's last known positions which are sent by the tracker to the UvA Bird tracking system's central database.

Real time data analysis

(Dockerfile)
(Mako)
(Perl)
+ 1

eEcology Tracker calendar

Calendar overview with daily statistics of GPS-trackers used to track bird movements.

Visualization

(CSS)
(JavaScript)
(Makefile)
+ 5

Inseq

Interpretability for sequence generation models 🐛 🔍

deep learning
Explainable AI
generative models
+ 2

(Dockerfile)
(Makefile)
(Python)

JASP modules app

A web application that allows you to search/filter all the available JASP modules and install them.

(CSS)
(HTML)
(TypeScript)