Netherlands eScience Center
National platform for the development and application of domain overarching software and methods for the scientific community
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- (Makefile)
- (Python)
- (TeX)
pdbtbx-ts
Want to parse Protein Data Bank files in JavaScript
- Optimized data handling
- (JavaScript)
- (Rust)
- (TypeScript)
PerfectFit
This is a virtual coach system that coaches users into being more physically active and stop smoking.
- Big data
- health
- (Gherkin)
- (JavaScript)
- (Shell)
PIDIMEHS library
Showcases a diachronic analysis of the Dutch Royal Library's newspaper archive.
- Big data
- Real time data analysis
- Text analysis & natural language processing
- + 1
PIQMIe
A web tool for mass spectrometry-based proteomics data analyses
- Data Analysis
- mass spectrometry
- Optimized data handling
- + 2
- (Dockerfile)
- (HTML)
- (JavaScript)
- + 3
PlanEO Dashboard
Provides an interactive interface for visualizing geographical data relevant to the MINE-DD project, including pathogen distribution, risk factors, and demographic analysis through both point data and raster overlays.
- Data Analysis
- Demographic Analysis
- Geographic Visualization
- + 8
- (CSS)
- (Dockerfile)
- (HTML)
- + 5
Platalea
Platalea contains deep neural network architectures for modeling spoken language from multiple sources at once: audio, and simultaneously images, text or video. This can be used to learn about what different context sources add to the language acquisition process.
- (Python)
powerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
- cryo-electron microscopy
- macromolecular structure
- map fitting
- (C)
- (Cython)
- (Dockerfile)
- + 1
PowerSensor3
PowerSensor is a low-cost, custom-built device that measures the instantaneous power consumption of GPUs and other devices at a high time resolution.
- GPU
- High performance computing
- (C)
- (C++)
- (CMake)
- + 3
prfmodel
A modern Python implementation for population receptive field modelling.
- GPU
- Neuroscience
- optimization
- + 2
- (Python)
protein-detective
Python package to detect proteins in EM density maps.
- (Python)
protein-quest
Python package to search/retrieve/filter proteins and protein structures
- (Python)