Toolkit for data acquisition, pre-processing, calibration, and real-time streaming of imaging, position tracking, and other sensor data for medical applications.

3D Slicer
electromagnetic tracking
image capture
+ 7

C++
C
CMake
+ 2

PoreSpy

PoreSpy is a collection of image analysis tools used to extract information from 3D images of porous materials (typically obtained from X-ray tomography).

image analysis
porous media
tomography

Python
C
Shell
+ 2

Radiam

Radiam helps researchers keep track of their data, regardless of where it is stored. There are multiple components working together, and most of them run within Docker containers.

metadata
RDM

Python
JavaScript
HTML
+ 3

Research Lifecycle Approach using Islandora

Islandora 8 is an open-source software framework designed to help organizations collaboratively manage and discover digital assets using a best-practices, standards-based preservation framework.

Research Portal for Secure Data Discovery, Access, and Collaboration

A Research Portal that can address these different usage models, while serving as website and gateway for authorized researchers to capture, query, and visualize patient data; communicate, collaborate and share datasets; and access support and training resources. platforms.

Collaboration
Data Access Request
Data Sharing
+ 3

SimVascular

The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.

Cardiovascular
Fluid mechanics
Medical image computing
+ 1

C++
Makefile
Python
+ 9

SlicerIGT

Software toolkit for rapid development of image-guided therapy systems - for minimally invasive medical procedures, where operators rely on computer-generated images rather than direct sight of the target organs.

3D Slicer
deep learning
Medical image computing
+ 2

C++
Python
CMake

SlicerRT

SlicerRT allows users to analyze spatio-temporal accumulation of the therapeutic dosage (radiation, thermal, etc.). Tools include dose visualization, quantitative metrics computation, comparison, and import/export to DICOM format.

C++
Python
CMake
+ 1

Umple

Umple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effort

Code Generation
Software Modeling
State Machines
+ 1

Java
JavaScript
GAP
+ 17

User-Defined Oceanographic Data Products

Allows researchers to access Oceans2.0 data products programmatically and also enable researchers to define, test, use and share processing code for user-defined data products in a custom-designed programming environment.

oceanography
Oceans

Virtual Health Gateway

The Virtual Health Gateway is a platform that facilitates direct, consistent, and standardized capture of diverse data types from research study participants in real-world settings.

Data
Data management
Data Sharing
+ 4

Web-enabled Awareness Research Network (WARN)

Web-enabled Awareness Research Network - Earthquake and Tsunami detection.

earthquake
Oceans
tsunami