All software
sfb-annotator
Annotate field books of natural history collections
- Inter-operability & linked data
- JavaScript
- Java
- CSS
- + 4
ShiCo
A visualization that shows how the meaning we attach to a given concept shifts over time.
- Text analysis & natural language processing
- Visualization
- Python
- JavaScript
- HTML
- + 3
Analizo
Analizo is a free, multi-language, extensible source code analysis. It supports the extraction and calculation of a fair number of source code metrics, generation of dependency graphs, and software evolution analysis.
- Software Evolution
- Source Code Metrics
- Static Analysis
- Perl
- C++
- C
- + 7
Baklava
Deploys a Kubernetes cluster and big data services on the cloud.
- Big data
- High performance computing
- Optimized data handling
- Python
- HCL
- Dockerfile
- + 2
Emo-spectre
Interactive visualization and exploration of multi modal time-series data and video
- Visualization
- Workflow technologies
- PLpgSQL
- Vue
- JavaScript
- + 5
GameBus FHIR Layer
Enable FHIR service for GameBus and beyond
- Data Harmonization
- FHIR
- healthcare
- + 1
- Java
- Dockerfile
- Shell
IRIDA
Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.
- genomics
- infectious disease
- Java
- JavaScript
- TypeScript
- + 6
Mahiru
A prototype for a federated, distributed data sharing and processing system.
- Data processing
- Data Sharing
- Policies
- + 1
- Python
- Makefile
- Dockerfile
- + 2
mzRecal
mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.
- mass spectrometry
- proteomics
- Go
- Shell
- R
- + 2
OpenMS
OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.
- C++
- mass spectrometry
- metabolomics
- + 1
- C++
- MAXScript
- Cython
- + 15
OpenPNM
OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.
- Pore network modeling
- C++
- MAXScript
- Cython
- + 15
self-hosted runners
Collection of resources to set up GitHub runners on self-hosted infrastructure
- High performance computing
- Shell
- Dockerfile