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Cover image for Paired omics data platform

Paired omics data platform

If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.

  • Inter-operability & linked data
  • TypeScript
  • JavaScript
  • HTML
  • + 3
2
0
Cover image for PanVA

PanVA

Variant Analysis within Pangenomes.

  • API
  • Data Analysis
  • pangenomics
  • Vue
  • TypeScript
  • Python
  • + 6
0
0
Cover image for parareal

parareal

This package runs the parareal algorithm on a black-box simulator. Parallelisation is managed through Dask.

  • High performance computing
  • Numerical analysis
  • CSS
  • Jupyter Notebook
  • Python
  • + 5
2
0
Cover image for PathVisio

PathVisio

PathVisio is a free open-source software to curate biological pathway models.

  • bioinformatics
  • PathVisio
  • Systems Biology
  • + 2
  • Java
  • HTML
  • JavaScript
  • + 4
9
2
Cover image for Via Appia Visualization

Via Appia Visualization

A web application which visualizes the point clouds and additional data gathered in the Via Appia project with WebGL.

  • Visualization
  • JavaScript
  • HTML
  • CSS
6
21
Cover image for PAVICS

PAVICS

PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.

  • analysis
  • climate
  • Climate change
  • + 5
  • HTML
  • Jupyter Notebook
  • Python
  • + 3
25
1
Cover image for Petri Nets on Hyperledger

Petri Nets on Hyperledger

Decentralized coordination of multi-domain workflows using Hyperledger Fabric blockchain and Petri nets.

  • Blockchain
  • hyperledger
  • Petri net
  • + 1
  • JavaScript
  • CSS
  • HTML
  • + 1
0
0
Cover image for PhenoTips

PhenoTips

PhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders.

  • API
  • deep phenotyping
  • genogram
  • + 6
  • Java
  • JavaScript
  • HTML
  • + 4
2
1
Cover image for PIQMIe

PIQMIe

A web tool for mass spectrometry-based proteomics data analyses

  • Optimized data handling
  • Visualization
  • JavaScript
  • HTML
  • Python
  • + 3
1
3
Cover image for Radiam

Radiam

Radiam helps researchers keep track of their data, regardless of where it is stored. There are multiple components working together, and most of them run within Docker containers.

  • metadata
  • RDM
  • Python
  • JavaScript
  • HTML
  • + 3
1
0
Cover image for recipy

recipy

Effortless provenance tracking in Python

  • Inter-operability & linked data
  • Optimized data handling
  • Python
  • HTML
  • Jupyter Notebook
  • + 2
2
0
Cover image for Ricgraph - Research in context graph

Ricgraph - Research in context graph

With Ricgraph (Research in context graph), you can create a graph from research information that is stored in various source systems. You can explore this graph and discover relations you were not aware of.

  • graph
  • graph database
  • research in context graph
  • + 2
  • Python
  • JavaScript
  • CSS
1
2