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13-24 of 42

FastMLC

Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.

Big data
Machine learning
Visualization

C++
C
Makefile
+ 5

grpc4bmi

Run, read and write model state of a numerical simulation written in a variety of languages remotely from Python

Multi-scale & multi model simulations

Python
C++
Dockerfile
+ 5

HORTON

HORTON is a Helpful Open-source Research Tool for N-fermion systems, written primarily in the Python programming language. The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost.

electronic structure theory
quantum chemistry

Python
C++
Cython
+ 5

HPGEM

hpGEM is a C++ partial differential equation solver. It is intended for Discontinuous Galerkin Finite Element Methods, but can also do normal (conforming) Finite Element Methods and Finite Volume.

Finite Element
High performance computing

C++
CMake
TeX
+ 6

HyperCanny

Finds edges in high-dimensional data using the Canny algorithm.

High performance computing

C++
C
Python
+ 3

iScore

A framework and predictor based on support vector machine and random walk graph kernel for scoring protein-protein interfaces.

Big data
Machine learning

Python
Cuda
Makefile
+ 1

Kernel Launcher

Dynamically compile GPU kernels and launch them easily and safely using C++ magic. Tight integration with Kernel Tuner results in blazing fast CUDA code that is maintainable and performance portable.

auto-tuning
CUDA
GPU
+ 2

C++
Python
CMake
+ 3

KMM

KMM is a lightweight C++ middleware for accelerated computing.

GPU
High performance computing

C++
CMake
Makefile

Lightning

Lightning: Fast data processing using GPUs on distributed platforms

Big data
GPU
High performance computing

Rust
C++
Python

LUE

LUE is software for storing and manipulating large amounts of information for large numbers of objects. The software is useful, and currently mainly used, in the context of environmental modelling of biological and physical systems, represented by agents and fields.

Agent-based modeling
environmental modelling
field based modelling
+ 6

C++
Python
CMake
+ 5

m4ma

An R package containing C++ implementations to speed up the simulation and parameter estimation of the Predictive Pedestrian model.

geospatial
High performance computing
Real time data analysis

MagnumPI - Potential Integrator

A package for the calculation of scattering angles and cross sections.

Inter-operability & linked data
Visualization

C++
Mathematica
Python
+ 2