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Cover image for FastMLC

FastMLC

Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.

  • Big data
  • Machine learning
  • Visualization
  • C++
  • C
  • Makefile
  • + 5
5
11
Cover image for SIGA.py

SIGA.py

Make genome annotations semantically interoperable

  • Inter-operability & linked data
  • Python
2
11
Cover image for Cross-perspective Topic Modeling

Cross-perspective Topic Modeling

An application that uses cross-perspective topic modeling to extract topics and opinions from text and provides insight into how they change over time.

  • Text analysis & natural language processing
  • Python
  • Jupyter Notebook
  • Shell
3
10
Cover image for MDStudio

MDStudio

A tool to run molecular dynamics workflows.

  • High performance computing
  • Real time data analysis
  • Workflow technologies
  • Python
  • CSS
  • TypeScript
  • + 5
4
10
Cover image for DoE2Vec

DoE2Vec

DoE2Vec is a self-supervised approach to learn exploratory landscape analysis features from design of experiments. The model can be used for downstream meta-learning tasks such as learninig which optimizer works best on a given optimization landscape.

  • Machine learning
  • optimization
  • python
  • Python
  • R
  • Makefile
1
9
Cover image for MapReader

MapReader

MapReader is an end-to-end computer vision (CV) pipeline for exploring and analyzing images at scale.

  • computer vision
  • digital humanities
  • geospatial
  • + 4
  • Python
  • TeX
  • Dockerfile
  • + 1
7
9
Cover image for Xenon command line interface

Xenon command line interface

A command line interface for the Xenon library that allows you to use remote machines to do your computations.

  • High performance computing
  • Java
  • Common Workflow Language
  • Dockerfile
  • + 2
2
9
Cover image for Clustering Geo-data Cubes

Clustering Geo-data Cubes

Tool to perform cluster analysis of multi-dimensional geospatial data, running on local or distributed systems.

  • Big data
  • geospatial
  • Machine learning
  • + 1
  • Python
  • Jupyter Notebook
  • TeX
7
8
Cover image for ChemSpaX: A Python tool for local chemical space exploration

ChemSpaX: A Python tool for local chemical space exploration

ChemSpaX is a Python package that can be used for local chemical space exploration of any structure. This is done by placing substuents on a pre-defined skeleton. A substituent can be chosen from an existing library and can be attached to the skeleton.

  • catalysis
  • Chemistry
  • python
  • Python
  • Shell
3
8
Cover image for pdb2sql

pdb2sql

Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.

  • Big data
  • Optimized data handling
  • Python
  • TeX
  • Makefile
2
8
Cover image for COVID-19 Piedmont

COVID-19 Piedmont

COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.

  • Computational Epidemiology
  • COVID-19
  • COVID-19 Data
  • + 14
  • Julia
2
8
Cover image for pypfilt

pypfilt

A Sequential Monte Carlo (SMC, or "particle filter") Python package for online model estimation and probabilistic forecasting.

  • Bayesian Inference
  • Forecasting
  • Sequential Monte Carlo
    1
    8