Software | Research Software Directory

fsbrain

The fsbrain package provides visualization of neuroimaging data in R. The plots produced by fsbrain can be integrated into R notebooks or written to high-quality bitmap image files, ready for publication.

Computational Neuroscience
Visualization

(Dockerfile)
(R)
(Shell)

1

47

[MegAWES] Matlab/Simulink model underlying the publication: Six Degrees-of-Freedom Simulation Model for Multi-Megawatt Airborne Wind Energy Systems

6 DoF rigid-body kite
Airborne Wind Energy (AWE)
Airborne wind energy power performance
+ 3

1

46

GreenspacePerception (Github) code repository: analysis underlying the publication "How well do NDVI and OpenStreetMap data capture people’s visual perceptions of urban greenspace?"

Crowdsourcing
NDVI
OpenStreetMap
+ 2

4

45

Code and secondary data of analysis on pesticide transport during rainfall runoff events

erosion
particulate phase
Pesticides
+ 3

1

44

3D-e-Chem Virtual Machine

A freely available Virtual Machine encompassing tools, databases, and workflows for cheminformaticians, including new resources developed for ligand binding site comparisons and GPCR research.

Inter-operability & linked data
Workflow technologies

(Shell)
(Smarty)

2

42

CODaN

CODaN: Common Objects Day and Night, an image classification dataset.

color invariants
computer vision
day-night
+ 2

(Markdown)
(Other)
(Python)

4

42

Code underlying the publication: Zero-Shot Day-Night Domain Adaptation with a Physics Prior

color invariant convolution
color invariants
data efficient deep learning

(Markdown)
(Other)
(Python)

4

42

compareMS2

compareMS2 is a tool for direct comparison of tandem mass spectrometry (MS/MS) datasets, typically from LC-MS/MS, in proteomics or metabolomics, defining a distance as a function of the share of similar spectra. Applications span biomedicine, phylogenetics, forensics, ecology and food science.

Ecology
Food Science
Forensics
+ 4

(CSS)
(Go)
(HTML)
+ 2

4

42

KLIFS KNIME nodes

If you are working in the KNIME worflow platform and need data about your favorite kinase receptor ligand interaction, then these nodes are for you.

Workflow technologies

(Java)
(Scala)
(Shell)

2

42

Code underlying the publication: Integrity-based Explanations for Fostering Appropriate Trust in AI Agents

AI agent
appropriate trust
explanations
+ 1

4

41

Research Software Directory

A content management system for research software, which promotes the visibility, reuse, and impact of research software.

FAIR
Research Software Impact
Software Citation

(CSS)
(Dockerfile)
(Go)
+ 9

26

41

KNIME Silicos-it nodes

A node for the KNIME workflow systems that allows you to use the Silicos-it software to filter or align molecules.

Workflow technologies

(Java)

2

40