All software
MMSODA Toolbox for MATLAB
MATLAB toolbox for global optimization and state estimation of dynamic models using distributed computing.
- HTML
- MATLAB
- TeX
- + 5
OpenMS
OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.
- C++
- mass spectrometry
- metabolomics
- + 1
- C++
- MAXScript
- Cython
- + 15
OpenPNM
OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.
- Pore network modeling
- C++
- MAXScript
- Cython
- + 15
PAVICS
PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.
- analysis
- climate
- Climate change
- + 5
- HTML
- Jupyter Notebook
- Python
- + 3
PhenoTips
PhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders.
- API
- deep phenotyping
- genogram
- + 6
- Java
- JavaScript
- HTML
- + 4
PyChelator
PyChelator is a Python-based Colab and web application for metal chelator calculations, taking into account pH, temperature, and ionic strength. The build-in constants can be used for EGTA and ATP as chelators, together with Calcium and Magnesium as metals. User-defined constants can be used.
- application
- calcium
- chelator
- + 7
- Jupyter Notebook
- JavaScript
- HTML
- + 2
SalientDescriptor-matlab
If you need to automate your image matching tasks for the purposes of object detection or photo-identification in an easy way, the SalientDescriptor-matlab is right for you
- Image processing
- MATLAB
- HTML
SimVascular
The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.
- Cardiovascular
- Fluid mechanics
- Medical image computing
- + 1
- C++
- Tcl
- Makefile
- + 9
Umple
Umple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effort
- Code Generation
- Software Modeling
- State Machines
- + 1
- Java
- JavaScript
- GAP
- + 17
Workflomics
Web platform for workflow exploration and benchmarking in bioinformatics
- Inter-operability & linked data
- Workflow technologies
- TypeScript
- CSS
- HTML
- + 1
Artifact of Knor: reactive synthesis using Oink
Artifact of Knor: reactive synthesis using Oink
- binary decision diagrams
- parity games
- reactive synthesis
- Other
- C
- HTML
- + 15
CHI2025_Plan-then-Execute_LLMAgent
User Interaction Dataset for CHI 2025 paper "Plan-Then-Execute: An Empirical Study of User Trust and Team Performance When Using LLM Agents As A Daily Assistant."
- Daily Assistant
- Human-AI Collaboration
- large language models
- + 2
- JSON
- Other
- Python
- + 7