All software
MapReader
MapReader is an end-to-end computer vision (CV) pipeline for exploring and analyzing images at scale.
- computer vision
- digital humanities
- geospatial
- + 4
- Dockerfile
- Python
- Shell
- + 1
pbg-ld
Access integrated data on genes and associated traits in plants
- Data Analysis
- genomics
- Inter-operability & linked data
- Dockerfile
- Makefile
- PLpgSQL
- + 2
ChemSpaX: A Python tool for local chemical space exploration
ChemSpaX is a Python package that can be used for local chemical space exploration of any structure. This is done by placing substuents on a pre-defined skeleton. A substituent can be chosen from an existing library and can be attached to the skeleton.
- catalysis
- Chemistry
- python
- Python
- Shell
Xenon
If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.
- batch-job
- distributed computing
- FTP
- + 11
- Batchfile
- Java
- Shell
Cross-perspective Topic Modeling
An application that uses cross-perspective topic modeling to extract topics and opinions from text and provides insight into how they change over time.
- Text analysis & natural language processing
- Jupyter Notebook
- Python
- Shell
nanopub
The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.
- Inter-operability & linked data
- JavaScript
- Python
- Shell
DALES
DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.
- C
- CMake
- Fortran
- + 8
FastMLC
Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.
- Big data
- Machine learning
- Visualization
- C
- C++
- CMake
- + 5
MDStudio
A tool to run molecular dynamics workflows.
- High performance computing
- Real time data analysis
- Workflow technologies
- CSS
- Dockerfile
- HTML
- + 5
Virtual Human Platform
The Virtual Human Platform (VHP) was developed through the VHP4Safety project to support chemical and pharmaceutical safety testing. VHP provides you with human-relevant tools and models for precision safety evaluation, helping you reduce reliance on laboratory animals.
- toxicology
- CSS
- Dockerfile
- HTML
- + 4
Software and data underlying the publication: Faithful Model Explanations through Energy-Constrained Conformal Counterfactuals
Software and data underlying the publication: Faithful Model Explanations through Energy-Constrained Conformal Counterfactuals
- Classification and Regression
- Deep Generative Models & Autoencoders
- Humanities & Computational Social Science
- + 1
- JavaScript
- JSON
- Julia
- + 6
Turing Data Safe Haven
Data Safe Haven is an open-source framework for creating Trusted Research Environments (TREs) to analyse sensitive data. It provides a set of scripts that will allow you to deploy, administer and use your own TRE on Microsoft Azure cloud.
- Cloud
- cloud storage
- Infrastructure as code
- + 3
- Dockerfile
- Jinja
- PLpgSQL
- + 4