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Cover image for mzRecal

mzRecal

mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.

  • mass spectrometry
  • proteomics
  • Go
  • Shell
  • R
  • + 2
2
1
Cover image for OpenMS

OpenMS

OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.

  • C++
  • mass spectrometry
  • metabolomics
  • + 1
  • C++
  • MAXScript
  • Cython
  • + 15
27
1
Cover image for OpenPNM

OpenPNM

OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.

  • Pore network modeling
  • C++
  • MAXScript
  • Cython
  • + 15
5
1
Cover image for self-hosted runners

self-hosted runners

Collection of resources to set up GitHub runners on self-hosted infrastructure

  • High performance computing
  • Shell
  • Dockerfile
5
1
Cover image for Umple

Umple

Umple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effort

  • Code Generation
  • Software Modeling
  • State Machines
  • + 1
  • Java
  • JavaScript
  • GAP
  • + 17
14
1
Cover image for Allelic Variation Explorer

Allelic Variation Explorer

If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.

  • Visualization
  • Python
  • Dockerfile
  • AngelScript
2
0
Cover image for haddock3-webapp

haddock3-webapp

Web app to build haddock3 configuration and run it.

  • TypeScript
  • CSS
  • JavaScript
  • + 2
2
0
Cover image for i-VRESSE bartender

i-VRESSE bartender

Bartender is a middleware web service to schedule jobs on various infrastructures.

  • Workflow technologies
  • Python
  • Dockerfile
  • Mako
3
0
Cover image for BIOMERO

BIOMERO

a scalable and extensible image analysis framework

  • biaflows
  • bioimaging
  • biomero
  • + 9
  • Python
  • Shell
  • Dockerfile
1
0
Cover image for boatswain

boatswain

Boatswain is a simple build system for docker images. It is especially useful when you have multiple docker images that depend on each other.

  • containers
  • docker
  • Python
  • Dockerfile
2
0
Cover image for c3s-magic-wps

c3s-magic-wps

Web Processing Service for Climate Data Analysis in the MAGIC project.

  • Python
  • Makefile
  • Shell
  • + 1
5
0
Cover image for Ceiba

Ceiba

Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.

  • Optimized data handling
  • Python
  • TeX
  • Shell
  • + 1
2
0