All software

37-48 of 705

powerfit

Rigid body fitting of atomic strucures in cryo-electron microscopy density maps

cryo-electron microscopy
macromolecular structure
map fitting

C
Cuda
Dockerfile
+ 3

CODaN

CODaN: Common Objects Day and Night, an image classification dataset.

color invariants
computer vision
day-night
+ 2

Markdown
Other
Python

Code underlying the publication: Zero-Shot Day-Night Domain Adaptation with a Physics Prior

color invariant convolution
color invariants
data efficient deep learning

Markdown
Other
Python

dtscalibration

A Python package to load raw Distributed Temperature Sensing (DTS) files, perform a calibration, and plot the result.

calibration
DTS
fiber optic
+ 1

Jupyter Notebook
Python

NPLinker Web Application

This is the NPLinker web application, developed with Plotly Dash. It enables interactive visualization of NPLinker predictions and is designed to be run locally or in a containerized environment.

Data mining
Genome
Metabolome
+ 2

CSS
Dockerfile
Mustache
+ 1

PanTools

PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.

Data Analysis
Gene classification
pangenomics

Java
Python
Roff Manpage
+ 1

MPI.jl

MPI wrappers for Julia

HPC
Julia Package
MPI

Julia
Python
Shell

QMflows

Construction and efficient execution of computational chemistry workflows.

Multi-scale & multi model simulations
Workflow technologies

Jupyter Notebook
Python
Shell

Vantage6

An open-source platform for supporting the development of federated learning projects

federated learning
healthcare
privacy preserving analysis
+ 1

Dockerfile
Go Template
HTML
+ 7

GSA report

GSAreport is an application to easily generate reports that describe the global sensitivities of your input parameters as best as possible. You can use the reporting application to inspect which features are important for a given real world function / simulator or model.

Explainable AI
Machine learning
python
+ 1

CSS
HTML
Jupyter Notebook
+ 1

open-DARTS

Open Delft Advanced Research Terra Simulator is a simulation framework for forward and inverse modelling and uncertainty quantification of multi-physics (thermo-hydro-mechanical-chemical) processes in geo-engineering applications as geothermal, CO2 sequestration, water pumping, and hydrogen storage.

energy transition
environmental modelling
geothermal
+ 3

C++
CMake
Cuda
+ 2

mcfly

Helps you find a suitable neural network configuration for deep learning on time series.

auto-ml
deep learning
Machine learning
+ 1

CSS
HTML
JavaScript
+ 1