All software

25-36 of 119

3D Slicer

3D Slicer is a free, open source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures.

3D
3DSlicer
Extension
+ 7

C
C++
CMake
+ 6

Code and data supporting the publication: ZIMFLUX: Single molecule localization microscopy with patterned illumination in 3D

modulated excitation
SMLM
Super-Resolution Microscopy
+ 2

MagnumPI - Potential Integrator

A package for the calculation of scattering angles and cross sections.

Inter-operability & linked data
Visualization

C++
CMake
M4Sugar
+ 2

PowerSensor3

PowerSensor is a low-cost, custom-built device that measures the instantaneous power consumption of GPUs and other devices at a high time resolution.

GPU
High performance computing

C
C++
CMake
+ 3

mason_constitutive_model

MASON (Masonry Advanced Softening cONtact) source code

cyclicity
distinct element method
explicit integration scheme
+ 3

C
C++
Markdown
+ 1

eAstroViz

This tool can convert and visualize radio astronomy measurement sets, as well as most LOFAR intermediate data products. It also performs RFI mitigation.

LOFAR
radio astronomy
RFI

C
C++
Cuda
+ 3

LUE

LUE is software for storing and manipulating large amounts of information for large numbers of objects. The software is useful, and currently mainly used, in the context of environmental modelling of biological and physical systems, represented by agents and fields.

Agent-based modeling
environmental modelling
field based modelling
+ 6

Batchfile
C
C++
+ 6

Entangled

Entangled makes literate programming easier. It keeps markdown and program source in sync. This makes it more convenient to extend and debug your literate code.

Literate Programming
open science
python
+ 2

C
C++
Jinja
+ 3

SlicerRT

SlicerRT allows users to analyze spatio-temporal accumulation of the therapeutic dosage (radiation, thermal, etc.). Tools include dose visualization, quantitative metrics computation, comparison, and import/export to DICOM format.

C
C++
CMake
+ 1

oraqle

Oraqle: A Depth-Aware Secure Computation Compiler

arithmetization
compiler
cryptography
+ 1

C++
Jupyter Notebook
Markdown
+ 4

SO-CRYSTAL

Code underlying: Shape Optimization of Scintillation Crystals through GEANT4 and NSGAII (SO-CRYSTAL)

Finite-difference time-domain method
Genetic algorithms
Material properties
+ 2

C++
Markdown
Other
+ 1

FlexRL

A Flexible Model For Record Linkage

latent variable model
partially identifying variables
record linkage
+ 1