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Cover image for FastMLC

FastMLC

Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.

  • Big data
  • Machine learning
  • Visualization
  • C++
  • C
  • Makefile
  • + 5
5
11
Cover image for 3D Slicer

3D Slicer

3D Slicer is a free, open source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures.

  • 3D
  • 3DSlicer
  • Extension
  • + 7
  • C++
  • Python
  • CMake
  • + 5
4
5
Cover image for MagnumPI - Potential Integrator

MagnumPI - Potential Integrator

A package for the calculation of scattering angles and cross sections.

  • Inter-operability & linked data
  • Visualization
  • C++
  • Mathematica
  • Python
  • + 2
6
5
Cover image for eAstroViz

eAstroViz

This tool can convert and visualize radio astronomy measurement sets, as well as most LOFAR intermediate data products. It also performs RFI mitigation.

  • LOFAR
  • radio astronomy
  • RFI
  • Java
  • C++
  • Cuda
  • + 3
1
4
Cover image for Lightning

Lightning

Lightning: Fast data processing using GPUs on distributed platforms

  • Big data
  • GPU
  • High performance computing
  • Rust
  • C++
  • Python
2
4
Cover image for LUE

LUE

LUE is software for storing and manipulating large amounts of information for large numbers of objects. The software is useful, and currently mainly used, in the context of environmental modelling of biological and physical systems, represented by agents and fields.

  • Agent-based modeling
  • environmental modelling
  • field based modelling
  • + 6
  • C++
  • Python
  • CMake
  • + 6
3
4
Cover image for SlicerRT

SlicerRT

SlicerRT allows users to analyze spatio-temporal accumulation of the therapeutic dosage (radiation, thermal, etc.). Tools include dose visualization, quantitative metrics computation, comparison, and import/export to DICOM format.

  • C++
  • Python
  • CMake
  • + 1
3
3
Cover image for Entangled

Entangled

Entangled makes literate programming easier. It keeps markdown and program source in sync. This makes it more convenient to extend and debug your literate code.

  • Literate Programming
  • open science
  • python
  • + 2
  • Python
  • C++
  • Makefile
  • + 2
5
2
Cover image for Analizo

Analizo

Analizo is a free, multi-language, extensible source code analysis. It supports the extraction and calculation of a fair number of source code metrics, generation of dependency graphs, and software evolution analysis.

  • Software Evolution
  • Source Code Metrics
  • Static Analysis
  • Perl
  • C++
  • C
  • + 7
2
1
Cover image for byteparsing

byteparsing

Parser library for reading custom binary files from Python.

  • Big data
  • Multi-scale & multi model simulations
  • Optimized data handling
  • Jupyter Notebook
  • Python
  • C++
  • + 5
2
1
Cover image for OpenMS

OpenMS

OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.

  • C++
  • mass spectrometry
  • metabolomics
  • + 1
  • C++
  • MAXScript
  • Cython
  • + 15
27
1
Cover image for OpenPNM

OpenPNM

OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.

  • Pore network modeling
  • C++
  • MAXScript
  • Cython
  • + 15
5
1