All software
powerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
- cryo-electron microscopy
- macromolecular structure
- map fitting
- Python
- C
- Cython
- + 1
compareMS2
compareMS2 is a tool for direct comparison of tandem mass spectrometry datasets, typically from liquid chromatography-tandem mass spectrometry (LC-MS/MS), defining a distance as a function of the share of similar spectra. Applications span biomedicine, phylogenetics, forensics and food science.
- Forensics
- mass spectrometry
- phylogenetics
- + 1
- JavaScript
- C
- HTML
- + 2
HyperCanny
Finds edges in high-dimensional data using the Canny algorithm.
- Data Analysis
- edge detection
- High performance computing
- C++
- C
- Python
- + 3
OMUSE
A Python environment to interface and couple oceanographic and other earth system model codes.
- High performance computing
- Multi-scale & multi model simulations
- Fortran
- Python
- HTML
- + 10
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- Fortran
- C++
- Python
- + 4
DALES
DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.
- Fortran
- C
- TeX
- + 8
ExploreASL
ExploreASL is a pipeline and toolbox for image processing and statistics of arterial spin labeling perfusion MR images. It is designed as a multi-OS, open-source, collaborative framework that facilitates cross-pollination between image processing method developers and clinical investigators.
- ASL
- Image processing
- MRI
- MATLAB
- C
- Python
FastMLC
Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.
- Big data
- Machine learning
- Visualization
- C++
- C
- Makefile
- + 5
Code to incorporate entrapped air pocket dynamics into SWMM (AirSWMM2.0)
Code to incorporate entrapped air pocket dynamics into SWMM (AirSWMM2.0)
- Air pocket dynamics
- Intermittent water supply
- Pipe-filling events
- + 1
- C
- Other
- Markdown
AirSWMMv1.0
Code to incorporate entrapped air behaviour into SWMM (AirSWMM1.0)
- Air–water interface interaction
- Intermittent water supply
- Stormwater management model (SWMM)
- + 1
- C
- Other
3D Slicer
3D Slicer is a free, open source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures.
- 3D
- 3DSlicer
- Extension
- + 7
- C++
- Python
- CMake
- + 5
TIMP
TIMP is an R package for fitting superposition models that implements the partitioned variable projection algorithm. The package has been extensively applied to modeling spectroscopy and Fluorescence Lifetime Imaging Microscopy (FLIM) datasets. It serves as the backend for the Glotaran software.
- global analysis
- target analysis
- time-resolved spectroscopy
- R
- C