All software
Scripts and data accompanying publication: "Manure matters: Prospects for regional banana-livestock integration for sustainable intensification in South-West Uganda"
Scripts and data accompanying publication: "Manure matters: Prospects for regional banana-livestock integration for sustainable intensification in South-West Uganda"
- cattle
- crop-livestock integration
- East African Highland Banana
- + 5
Bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
- bioinformatics
- Cheminformatics
- (Java)
- (TeX)
gammalearn
Deep Learning for Imaging Cherenkov Telescopes Data Analysis
- cta
- deep learning
- Gamma-ray telescopes
- + 1
- (Dockerfile)
- (Python)
orbitN
Symplectic integrator for near-Keplerian planetary systems
- astronomical solution
- astronomy
- N-body
- + 2
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- (Makefile)
- (Python)
- (TeX)
Turing Data Safe Haven
Data Safe Haven is an open-source framework for creating Trusted Research Environments (TREs) to analyse sensitive data. It provides a set of scripts that will allow you to deploy, administer and use your own TRE on Microsoft Azure cloud.
- Cloud
- cloud storage
- Infrastructure as code
- + 3
- (Dockerfile)
- (Jinja)
- (Python)
- + 3
Virtual Human Platform
The Virtual Human Platform (VHP) was developed through the VHP4Safety project to support chemical and pharmaceutical safety testing. VHP provides you with human-relevant tools and models for precision safety evaluation, helping you reduce reliance on laboratory animals.
- toxicology
- (CSS)
- (Dockerfile)
- (HTML)
- + 4
WRFpy
WRFpy is a python application that provides an easy way to set up, run, and monitor Weather Research and Forecasting simulations
- Data Simulation
- python
- (Python)
Xenon command line interface
A command line interface for the Xenon library that allows you to use remote machines to do your computations.
- High performance computing
- (Batchfile)
- ("Common Workflow Language")
- (Dockerfile)
- + 2
Code supporting the paper: A Bayesian finite-element trained machine learning approach for predicting post-burn contraction
Code supporting the paper: A Bayesian finite-element trained machine learning approach for predicting post-burn contraction
- Feed-forward neural network
- Machine learning
- MATLAB
- + 5
Code underlying the publication: "PATE: Proximity-Aware Time series anomaly Evaluation"
Code underlying the publication: "PATE: Proximity-Aware Time series anomaly Evaluation"
- Anomaly detection
- Evaluation Metrics
- Precision
- + 2
- (Markdown)
- (Other)
- (Python)
- + 1
FedvsCent
Code supporting chapter 3 of the PhD thesis: "A comprehensive experimental comparison between federated and centralized learning Open Access"
- benchmark
- complex models
- Distributed data
- + 3