All software
swiftmhc
SwiftMHC is a deep learning algorithm for predicting pMHC structure and binding affinity at the same time.
- deep learning
- Protein-Protein Interaction
- Transformer
- Jupyter Notebook
- Mask
- Python
- + 1
TulipaEnergyModel
This package provides an optimization model for the electricity market and its coupling with other energy sectors. The objective is to determine the optimal investment and operation decisions for different types of assets.
- Energy system analysis
- Energy system modelling
- Integrated energy systems
- + 4
- Julia
- Python
- Ruby
- + 2
UFEMISM2.0
The successor of UFEMISM, has all of its features (and more?), but is based on the distributed architecture introduced in minimism.
- Finite volume method
- ice sheet
- MPI
- + 1
- CMake
- Fortran
- HTML
- + 6
xtas
the eXtensible Text Analysis Suite
- Text analysis & natural language processing
- Java
- Python
- Shell
Code and data supporting the publication: ZIMFLUX: Single molecule localization microscopy with patterned illumination in 3D
Code and data supporting the publication: ZIMFLUX: Single molecule localization microscopy with patterned illumination in 3D
- modulated excitation
- SMLM
- Super-Resolution Microscopy
- + 2
- C
- C#
- C++
- + 7
Hodge-Edge-GP
Code underlying: Hodge-Compositional Edge Gaussian Processes
- edge space
- forex
- Gaussian process
- + 2
- JSON
- Jupyter Notebook
- Markdown
- + 3
LDPoly
Source code for "LDPoly: Latent diffusion for polygonal road outline extraction in large-scale topographic mapping"
- aerial imagery
- latent diffusion
- polygonal road outline extraction
- + 4
- Markdown
- Python
- YAML
AstronomicAL
An interactive dashboard for visualisation, integration and classification of data using Active Learning.
- Active Learning
- Classification
- Data Analysis
- + 11
- Python
- TeX
eEcology Annotation Tool
Visualize and annotate GPS measurements of bird movements.
- Inter-operability & linked data
- Visualization
- API Blueprint
- CSS
- Dockerfile
- + 5
PSSMGen
Generates consistent PSSM and PDB files for protein-protein complexes
- Big data
- High performance computing
- Optimized data handling
- Makefile
- Python
SedTRAILS
SedTRAILS is a Lagrangian particle-tracking model for simulating and visualizing coastal sediment pathways and connectivity. Initial public release forthcoming ~February 2026.
- Coastal Engineering
- coastal processes
- connectivity
- + 5
- Python
sv-channels
Genome-wide detection of structural variants using deep learning
- Machine learning
- Jupyter Notebook
- Python
- R
- + 1