All software
JupyterLab dataset browser for THREDDS
A browser that allows you to include NetCDF data stored in THREDDS catalog into a Jupyter Notebook.
- Big data
- Optimized data handling
- CSS
- JavaScript
- Jupyter Notebook
- + 2
Laserfarm
Laserfarm: Laserchicken Framework for Applications in Research in Macroecology. Leverage Laserchicken in distributed fashion to use continental scale point cloud datasets for research.
- Dockerfile
- Jupyter Notebook
- Python
leakybucket
A Python BMI leaky bucket model 🪣
- Dockerfile
- Jupyter Notebook
- Python
med-imagetools
Aims to provide transparent and reproducible medical image processing pipelines in Python. Focuses on subject-based machine learning and processing DICOMs into deep learning-ready format.
- Imaging and Image Processing
- Dockerfile
- Jupyter Notebook
- Python
mibiscreen
Data handling and screening package of the Microbiome based remediation Prediction Tool
- Data Analysis
- Multi-scale & multi model simulations
- python
- Jupyter Notebook
- Python
- Shell
MITK
Combines ITK and VTK with an application framework. Aims to reduce effort for interactive medical image analysis applications.
- Imaging and Image Processing
- Batchfile
- C
- C++
- + 8
nedextract
nedextract is a python library that helps you to extract information on person names and organisations mentioned in Dutch (annual report) PDF files.
- Jupyter Notebook
- Python
- Shell
Noodle Biomedical Literature Discovery
Public, read-only biomedical literature search, publication inspection, and bounded citation and semantic graph traversal through a hosted MCP server.
- bioinformatics
- biomedical literature
- citation graph
- + 5
- Dockerfile
- Jupyter Notebook
- Python
- + 1
opynsim
Python-Native Musculoskeletal Modelling
- Batchfile
- BitBake
- C
- + 14
Orange Hackathon
Orange modules for text processing in the project What Works When for Whom
- CSS
- Jupyter Notebook
- Python
- + 2
parareal
This package runs the parareal algorithm on a black-box simulator. Parallelisation is managed through Dask.
- High performance computing
- Numerical analysis
- CSS
- Dhall
- HTML
- + 5
ParticleDA.jl
Julia package to perform data assimilation with particle filters, supporting both thread-based parallelism and distributed processing using MPI.
- Data assimilation
- Julia Package
- Particle filter
- Julia
- Jupyter Notebook
- Shell