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201 software items. Page 1 of 17. 12 items per page. 1 filters active.
1-12 of 201

COPASI

COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.

  • Dynamics
  • optimization
  • Parameter estimation
  • + 3
  • Batchfile
  • C
  • C#
  • + 17
12
2924

TOTEM_M

Code  underlying: Topology Optimization of Thermo-Electro-Mechanical elements (TOTEM)

  • Non-convexity
  • Power constraint
  • SIMP
  • + 3
  • HTML
  • large-text-file
  • Markdown
  • + 2
1
2841

Chemistry Development Kit

Open Source cheminformatics library.

  • Cheminformatics
  • Chemistry
  • Computational Chemistry
  • HTML
  • Java
  • Pawn
5
1856

UseGalaxy Canada

The main Canadian public Galaxy server

  • AI
  • astronomy
  • climate
  • + 10
  • HCL
  • HTML
  • Jinja
  • + 3
2
934

BridgeDb Java

Java library for identifier mapping

  • Data
  • persistent identifiers
  • Batchfile
  • CSS
  • HTML
  • + 5
18
237

OpenChrom

OpenChrom is a vendor independent open source software for chromatography, spectrometry and spectroscopy.

  • chromatography
  • mass spectrometry
  • CSS
  • HTML
  • Java
  • + 1
2
229

NNPDF

Fitting proton substructure to observation data using neural networks

  • Machine learning
  • PDF
  • C
  • CSS
  • HTML
  • + 5
7
204

ESMValCore

ESMValTool Core: core functionalities and driver for ESMValTool, a community diagnostic and performance metrics tool for routine evaluation of Earth System Models in CMIP.

  • Big data
  • Optimized data handling
  • Visualization
  • + 1
  • Dockerfile
  • HTML
  • JavaScript
  • + 4
55
161

ArrayAnalysis

ArrayAnalysis provides a user-friendly solution for transcriptomic data analysis. It allows researchers, regardless of their bioinformatics expertise, to efficiently analyse, explore, and interpret RNA sequencing and microarray datasets.

  • Data Analysis
  • data visualization
  • microarray
  • + 2
  • Batchfile
  • HTML
  • Inno Setup
  • + 2
2
146

Scholia

Graphical User Interface around Wikidata that uses SPARQL to collect data

  • Wikidata
  • CSS
  • Dockerfile
  • HTML
  • + 3
4
137

Paired omics data platform

If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.

  • Inter-operability & linked data
  • CSS
  • Dockerfile
  • HTML
  • + 3
2
130

MAGMa

MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.

  • Big data
  • Visualization
  • CSS
  • Cython
  • Dockerfile
  • + 5
3
110