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1-12 of 97
Cover image for COPASI

COPASI

COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.

  • Dynamics
  • optimization
  • Parameter estimation
  • + 3
  • C++
  • Java
  • Fortran
  • + 17
12
2616
Cover image for OpenChrom

OpenChrom

OpenChrom is a vendor independent open source software for chromatography, spectrometry and spectroscopy.

  • chromatography
  • mass spectrometry
  • Java
  • CSS
  • HTML
2
182
Cover image for BridgeDb Java

BridgeDb Java

Java library for identifier mapping

  • Data
  • persistent identifiers
  • Java
  • Perl
  • Shell
  • + 5
18
117
Cover image for NNPDF

NNPDF

Fitting proton substructure to observation data using neural networks

  • Machine learning
  • PDF
  • Python
  • Jupyter Notebook
  • CSS
  • + 4
7
106
Cover image for Paired omics data platform

Paired omics data platform

If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.

  • Inter-operability & linked data
  • TypeScript
  • JavaScript
  • HTML
  • + 3
2
99
Cover image for MAGMa

MAGMa

MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.

  • Big data
  • Visualization
  • Python
  • JavaScript
  • Makefile
  • + 5
3
95
Cover image for grlc

grlc

Builds a web API from SPARQL queries hosted on GitHub to accessing triple store data.

  • garlic
  • Inter-operability & linked data
  • Python
  • HTML
  • TeX
  • + 4
3
77
Cover image for Scholia

Scholia

Graphical User Interface around Wikidata that uses SPARQL to collect data

  • Wikidata
  • JavaScript
  • Python
  • HTML
  • + 3
4
72
Cover image for Via Appia Visualization

Via Appia Visualization

A web application which visualizes the point clouds and additional data gathered in the Via Appia project with WebGL.

  • Visualization
  • JavaScript
  • HTML
  • CSS
8
46
Cover image for mcfly

mcfly

Helps you find a suitable neural network configuration for deep learning on time series.

  • auto-ml
  • deep learning
  • Machine learning
  • + 1
  • JavaScript
  • Python
  • CSS
  • + 1
12
42
Cover image for Research Software Directory

Research Software Directory

A content management system for research software, which promotes the visibility, reuse, and impact of research software.

  • FAIR
  • Research Software Impact
  • Software Citation
  • TypeScript
  • Java
  • PLpgSQL
  • + 7
25
38
Cover image for KNIME molecule viewer nodes

KNIME molecule viewer nodes

A 3D viewer for large molecules for the KNIME workflow system.

  • Visualization
  • Workflow technologies
  • Java
  • JavaScript
  • CSS
2
30