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AMUSE

Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.

High performance computing
Multi-scale & multi model simulations
Workflow technologies

AMPL
C
Fortran
+ 25

Arpra

Arpra is a C library for analyzing the propagation of numerical error in arbitrary precision IEEE-754 floating-point computations.

Affine Arithmetic
Arbitrary Precision
Interval Arithmetic
+ 2

C
Makefile
M4

byteparsing

Parser library for reading custom binary files from Python.

Big data
Multi-scale & multi model simulations
Optimized data handling

Jupyter Notebook
Python
C++
+ 5

c3s-magic-wps

Web Processing Service for Climate Data Analysis in the MAGIC project.

Python
Makefile
Shell
+ 1

Canadian Writing Research Collaboratory (CWRC)

CWRC aims to make digital research methods broadly accessible, and to develop an active community of researchers engaged in exploring the potential of collaboration online.

Canadian culture & history
cultural studies
digital humanities
+ 1

JavaScript
PHP
HTML
+ 16

Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

High performance computing
Optimized data handling
Workflow technologies

Python
Common Workflow Language
Dockerfile
+ 2

check-deps

This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.

Dependency Hell
python
Workflow technologies

Python
CSS
Awk
+ 2

ClinDIG

ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.

clinical
federated
genomics
+ 1

Smarty
Python
Shell
+ 4

cwltool

The reference implementation of the Common Workflow Language standards

CommonWL
CWL
SciWorkflows

Python
Common Workflow Language
Shell
+ 4

DALES

DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.

Fortran
C
TeX
+ 8

DeepRank

Deep learning framework for data mining protein-protein interactions using CNN

Big data
Machine learning
Optimized data handling

Python
R
C
+ 2

DoE2Vec

DoE2Vec is a self-supervised approach to learn exploratory landscape analysis features from design of experiments. The model can be used for downstream meta-learning tasks such as learninig which optimizer works best on a given optimization landscape.

Machine learning
optimization
python

Python
R
Makefile