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Cover image for BIRCH

BIRCH

BIRCH is a powerful framework for organizing and using bioinformatics. BIRCH comes with hundreds of commonly-used tools, and allows you to customize your BIRCH site by adding new ones.

  • bioinformatics
  • BLAST
  • genomics
  • + 3
    1
    1
    Cover image for CanDIG CHORD

    CanDIG CHORD

    CHORD is a project to build a federated, Canadian, national data service for privacy- sensitive genomic and related health data. It allows the technologies and services being built by CanDIG and its international partners to be made available to the Canadian health research community more broadly.

    • CanDIG
    • GA4GH
    • genomics
    • Python
    • Lua
    • Shell
    1
    0
    Cover image for ClinDIG

    ClinDIG

    ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.

    • clinical
    • federated
    • genomics
    • + 1
    • Smarty
    • Shell
    • Python
    • + 4
    2
    0
    Cover image for GenAP

    GenAP

    Genetics and Genomics Analysis Platform (GenAP)

    • Biology
    • genetics
    • genomics
    • + 5
      3
      0
      Cover image for IRIDA

      IRIDA

      Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.

      • genomics
      • infectious disease
      • Java
      • JavaScript
      • TypeScript
      • + 6
      3
      1
      Cover image for NPLinker eScience Workshop GenMetMine Materials

      NPLinker eScience Workshop GenMetMine Materials

      These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining: https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are available in a format facilitating its reuse.

      • Data mining
      • genomics
      • Inter-operability & linked data
      • + 4
        0
        0
        Cover image for Overture Data Management System

        Overture Data Management System

        Overture is a collection of open-source, extendable solutions for big-data genomic science that research institutions and individual researchers can use to support their work.

        • authentication
        • cloud storage
        • genomics
        • + 2
        • Java
        • Shell
        • Dockerfile
        • + 1
        2
        0
        Cover image for PanTools-pipeline-v4

        PanTools-pipeline-v4

        General purpose Snakemake pipeline for PanTools v4.

        • Data Analysis
        • genomics
        • pangenomics
        • Python
        • Shell
        0
        0
        Cover image for pbg-ld

        pbg-ld

        Access integrated data on genes and associated traits in plants

        • Data Analysis
        • genomics
        • Inter-operability & linked data
        • PLpgSQL
        • Shell
        • Python
        • + 2
        4
        9
        Cover image for Virus Seq

        Virus Seq

        The VirusSeq Data Portal is an open-source and open-access data portal for all Canadian SARS-CoV-2 sequences and associated non-personal contextual data. It harmonizes, validates and automates submission to international databases.

        • COVID-19
        • Data portal
        • genomics
        • + 1
        • TypeScript
        • JavaScript
        • HTML
        • + 2
        1
        0