All software
pbg-ld
Access integrated data on genes and associated traits in plants
- Data Analysis
- genomics
- Inter-operability & linked data
- PLpgSQL
- Shell
- Python
- + 2
BIRCH
BIRCH is a powerful framework for organizing and using bioinformatics. BIRCH comes with hundreds of commonly-used tools, and allows you to customize your BIRCH site by adding new ones.
- bioinformatics
- BLAST
- genomics
- + 3
IRIDA
Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.
- genomics
- infectious disease
- Java
- JavaScript
- TypeScript
- + 6
CanDIG CHORD
CHORD is a project to build a federated, Canadian, national data service for privacy- sensitive genomic and related health data. It allows the technologies and services being built by CanDIG and its international partners to be made available to the Canadian health research community more broadly.
- CanDIG
- GA4GH
- genomics
- Python
- Lua
- Shell
ClinDIG
ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.
- clinical
- federated
- genomics
- + 1
- Python
- Shell
- Smarty
- + 5
GenAP
Genetics and Genomics Analysis Platform (GenAP)
- Biology
- genetics
- genomics
- + 5
NPLinker eScience Workshop GenMetMine Materials
These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining: https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are available in a format facilitating its reuse.
- Data mining
- genomics
- Inter-operability & linked data
- + 4
Overture Data Management System
Overture is a collection of open-source, extendable solutions for big-data genomic science that research institutions and individual researchers can use to support their work.
- authentication
- cloud storage
- genomics
- + 2
- Java
- Shell
- Dockerfile
- + 1
PanTools-pipeline-v4
General purpose Snakemake pipeline for PanTools v4.
- Data Analysis
- genomics
- pangenomics
- Python
- Dockerfile
- Shell
Scifeon Lims, ELN and Workflow Automation
Scifeon is a modular lab informatics platform combining LIMS and ELN to streamline workflows, ensure compliance, and increase productivity—designed for biotech and regulated labs.
- auditory processing
- Big data
- bioinformatics
- + 14
Virus Seq
The VirusSeq Data Portal is an open-source and open-access data portal for all Canadian SARS-CoV-2 sequences and associated non-personal contextual data. It harmonizes, validates and automates submission to international databases.
- COVID-19
- Data portal
- genomics
- + 1
- TypeScript
- JavaScript
- HTML
- + 2