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BIRCH

BIRCH is a powerful framework for organizing and using bioinformatics. BIRCH comes with hundreds of commonly-used tools, and allows you to customize your BIRCH site by adding new ones.

bioinformatics
BLAST
genomics
+ 3

CanDIG CHORD

CHORD is a project to build a federated, Canadian, national data service for privacy- sensitive genomic and related health data. It allows the technologies and services being built by CanDIG and its international partners to be made available to the Canadian health research community more broadly.

CanDIG
GA4GH
genomics

Python
Lua
Shell

ClinDIG

ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.

clinical
federated
genomics
+ 1

Smarty
Shell
Python
+ 4

GenAP

Genetics and Genomics Analysis Platform (GenAP)

Biology
genetics
genomics
+ 5

IRIDA

Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.

genomics
infectious disease

Java
JavaScript
TypeScript
+ 6

NPLinker eScience Workshop GenMetMine Materials

These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining: https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are available in a format facilitating its reuse.

Data mining
genomics
Inter-operability & linked data
+ 4

Overture Data Management System

Overture is a collection of open-source, extendable solutions for big-data genomic science that research institutions and individual researchers can use to support their work.

authentication
cloud storage
genomics
+ 2

Java
Shell
Dockerfile
+ 1

PanTools-pipeline-v4

General purpose Snakemake pipeline for PanTools v4.

Data Analysis
genomics
pangenomics

Python
Shell

pbg-ld

Access integrated data on genes and associated traits in plants

Data Analysis
genomics
Inter-operability & linked data

PLpgSQL
Shell
Python
+ 2

Virus Seq

The VirusSeq Data Portal is an open-source and open-access data portal for all Canadian SARS-CoV-2 sequences and associated non-personal contextual data. It harmonizes, validates and automates submission to international databases.

COVID-19
Data portal
genomics
+ 1

TypeScript
JavaScript
HTML
+ 2