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37-48 of 481

sv-callers

Highly portable parallel workflow to detect structural variants in cancer genomes.

Big data
High performance computing
Workflow technologies

Python
Shell

4CAT Capture & Analysis Toolkit

The 4CAT Capture and Analysis Toolkit provides modular data capture & analysis for a variety of social media platforms. Its goal is to make the capture and analysis of data from these platforms accessible to people through a web interface, without requiring any programming or web scraping skills.

Big data
python
Social media
+ 1

Python
JavaScript
HTML
+ 4

AMBER

A real-time pipeline to search for Fast Radio Bursts and other transient radio sources.

Big data
GPU
High performance computing
+ 1

C++
CMake

GSA report

GSAreport is an application to easily generate reports that describe the global sensitivities of your input parameters as best as possible. You can use the reporting application to inspect which features are important for a given real world function / simulator or model.

Explainable AI
Machine learning
python
+ 1

Python
HTML
CSS
+ 1

OMUSE

A Python environment to interface and couple oceanographic and other earth system model codes.

High performance computing
Multi-scale & multi model simulations

Fortran
Python
HTML
+ 10

AHN2 pointcloud viewer

A web application able to visualize the AHN2 point cloud data of the Netherlands.

Big data
Real time data analysis
Visualization

JavaScript
HTML
CSS
+ 1

APE

A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.

Java
Program synthesis
Workflow technologies

Java
TeX
ANTLR

HyperCanny

Finds edges in high-dimensional data using the Canny algorithm.

High performance computing

C++
C
Python
+ 3

KLIFS KNIME nodes

If you are working in the KNIME worflow platform and need data about your favorite kinase receptor ligand interaction, then these nodes are for you.

Workflow technologies

Java
Shell
Scala

PanTools

PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.

Data Analysis
Gene classification
pangenomics

Java
Snakemake
Python
+ 1

Citation File Format

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

FAIR
Inter-operability & linked data

Python

DIANNA

Deep Insight And Neural Network Analysis, DIANNA is the only Explainable AI, XAI library for scientists supporting Open Neural Network Exchange, ONNX - the de facto standard models format.

Explainable AI
Image processing
Machine learning
+ 2

Jupyter Notebook
Python
TeX