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Cover image for Vantage6

Vantage6

An open-source platform for supporting the development of federated learning projects

  • federated learning
  • healthcare
  • privacy preserving analysis
  • + 1
  • Python
  • TypeScript
  • HTML
  • + 6
8
50
Cover image for Netherlands eScience Center Python Template

Netherlands eScience Center Python Template

Generic template for Python packages, so you can spend less time setting up and configuring, and comply with the Netherlands eScience Center Software Development Guide from the start.

  • software development tools
  • software sustainability
  • template
  • Jinja
  • Python
  • Shell
23
48
Cover image for Via Appia Visualization

Via Appia Visualization

A web application which visualizes the point clouds and additional data gathered in the Via Appia project with WebGL.

  • Visualization
  • JavaScript
  • HTML
  • CSS
8
47
Cover image for mcfly

mcfly

Helps you find a suitable neural network configuration for deep learning on time series.

  • auto-ml
  • deep learning
  • Machine learning
  • + 1
  • JavaScript
  • Python
  • CSS
  • + 1
12
45
Cover image for compareMS2

compareMS2

compareMS2 is a tool for direct comparison of tandem mass spectrometry datasets, typically from liquid chromatography-tandem mass spectrometry (LC-MS/MS), defining a distance as a function of the share of similar spectra. Applications span biomedicine, phylogenetics, forensics and food science.

  • Forensics
  • mass spectrometry
  • phylogenetics
  • + 1
  • JavaScript
  • C
  • HTML
  • + 2
2
40
Cover image for open-DARTS

open-DARTS

Open Delft Advanced Research Terra Simulator is a simulation framework for forward and inverse modelling and uncertainty quantification of multi-physics (thermo-hydro-mechanical-chemical) processes in geo-engineering applications as geothermal, CO2 sequestration, water pumping, and hydrogen storage.

  • energy transition
  • environmental modelling
  • geothermal
  • + 3
  • Python
  • C++
  • Cuda
  • + 2
13
39
Cover image for Research Software Directory

Research Software Directory

A content management system for research software, which promotes the visibility, reuse, and impact of research software.

  • FAIR
  • Research Software Impact
  • Software Citation
  • TypeScript
  • Java
  • PLpgSQL
  • + 7
26
38
Cover image for fsbrain

fsbrain

The fsbrain package provides visualization of neuroimaging data in R. The plots produced by fsbrain can be integrated into R notebooks or written to high-quality bitmap image files, ready for publication.

  • Computational Neuroscience
  • Visualization
  • R
  • Dockerfile
  • Shell
1
37
Cover image for 3D-e-Chem Virtual Machine

3D-e-Chem Virtual Machine

A freely available Virtual Machine encompassing tools, databases, and workflows for cheminformaticians, including new resources developed for ligand binding site comparisons and GPCR research.

  • Inter-operability & linked data
  • Workflow technologies
  • Shell
  • Smarty
2
35
Cover image for Ersilia Model Hub

Ersilia Model Hub

The Ersilia Model Hub is an open source platform to serve AI/ML models for infectious disease drug discovery.

  • AI
  • Chemistry
  • Drug discovery
  • + 1
  • Python
  • Jupyter Notebook
  • Dockerfile
  • + 1
3
35
Cover image for KLIFS KNIME nodes

KLIFS KNIME nodes

If you are working in the KNIME worflow platform and need data about your favorite kinase receptor ligand interaction, then these nodes are for you.

  • Workflow technologies
  • Java
  • Shell
  • Scala
2
35
Cover image for KNIME Silicos-it nodes

KNIME Silicos-it nodes

A node for the KNIME workflow systems that allows you to use the Silicos-it software to filter or align molecules.

  • Workflow technologies
  • Java
2
33