All software
DeepRank GNN
DeepRank-GNN is the graph neural network of our DeepRank package. DeepRank GNN allows to train graph neural networks to classify protein-protein interface
- Machine learning
- Protein-Protein Interaction
- Python
BridgeDb Java
Java library for identifier mapping
- Data
- persistent identifiers
- Java
- Perl
- Shell
- + 5
Paired omics data platform
If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.
- Inter-operability & linked data
- TypeScript
- JavaScript
- HTML
- + 3
matchms
Python library for fuzzy comparison of mass spectrum data and other Python objects
- Big data
- Optimized data handling
- Python
- TeX
- Batchfile
- + 1
MAGMa
MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.
- Big data
- Visualization
- Python
- JavaScript
- Makefile
- + 5
splithalfr
Estimates split-half reliabilities for scoring algorithms of cognitive tasks and questionnaires.
- Data Analysis
- Statistics
- R
DeepRank
Deep learning framework for data mining protein-protein interactions using CNN
- Big data
- Machine learning
- Optimized data handling
- Python
- R
- C
- + 2
GrainLearning
Unsure about the parameters of your grains in a computer simulation? Use Iterative Bayesian Filtering to learn parameter distributions from limited data. Is your model running slowly? Speed up your simulations with machine-learning surrogates. All these features are integrated within GrainLearning.
- Bayesian Inference
- Data assimilation
- Machine learning
- + 2
- Jupyter Notebook
- Python
- PureBasic
- + 1
TraP: The LOFAR Transients Pipeline
The LOFAR Transients Pipeline (or "TraP") is a Python and SQL based system for detecting and responding to transient and variable sources in a stream of astronomical images.
- Image processing
- radio astronomy
- Source association
- + 3
- Python
- PLpgSQL
- Mako
- + 1
Matlab codes for Probabilistic Field Approach for Motorway Driving Risk Assessment
Matlab codes for Probabilistic Field Approach for Motorway Driving Risk Assessment
- automated driving
- Collision probability
- Reachability analysis
- + 1
snvec
snvec: Pre-computed Precession-Tilt solutions and C code.
- astronomical solution
- Astrophysics
- obliquity
- + 3
- C
svnecR
Easily calculate precession and obliquity from an astronomical solution and assumed or reconstructed values for dynamical ellipticity (Ed) and tidal dissipation (Td). This is a translation and adaptation of the C-code in Zeebe and Lourens (2022), with further details in Zeebe (2022).
- astronomical solution
- cyclostratigraphy
- dynamical ellipticity
- + 12
- R
- Rez