All software
sv-callers
Highly portable parallel workflow to detect structural variants in cancer genomes.
- Big data
- High performance computing
- Workflow technologies
- Python
- Shell
KNIME Python node archetype
Want to write your own KNIME node wrapping a Python library. Then use the KNIME Python node archetype to generate a node skeleton repository with sample code
- Big data
- Workflow technologies
- Java
- Python
AHN2 pointcloud viewer
A web application able to visualize the AHN2 point cloud data of the Netherlands.
- Big data
- Real time data analysis
- Visualization
- JavaScript
- HTML
- CSS
- + 1
AMBER
A real-time pipeline to search for Fast Radio Bursts and other transient radio sources.
- Big data
- GPU
- High performance computing
- + 1
- C++
- CMake
AHN point cloud viewer web service
A web service to serve large point cloud data efficiently using octrees.
- Big data
- Visualization
- Java
- Python
laserchicken
Toolkit for preprocessing and feature calculation of point clouds created using airborne laser scanning
- Big data
- Machine learning
- Python
- Jupyter Notebook
Dive
Interactively explore millions of 2D and 3D data points in your browser, without the need to install anything.
- Big data
- Machine learning
- Visualization
- HTML
- JavaScript
- CSS
- + 1
FastMLC
Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.
- Big data
- Machine learning
- Visualization
- C++
- C
- Makefile
- + 5
Clustering Geo-data Cubes
Tool to perform cluster analysis of multi-dimensional geospatial data, running on local or distributed systems.
- Big data
- geospatial
- Machine learning
- + 1
- Python
- Jupyter Notebook
- TeX
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- Python
- TeX
- Makefile
ece2cmor3
Process EC-Earth output to publish for CMIP6
- Big data
- High performance computing
- Optimized data handling
- Shell
- Python
PSSMGen
Generates consistent PSSM and PDB files for protein-protein complexes
- Big data
- High performance computing
- Optimized data handling
- Python
- Makefile