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Cover image for AMUSE

AMUSE

Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.

  • High performance computing
  • Multi-scale & multi model simulations
  • Workflow technologies
  • AMPL
  • C
  • Fortran
  • + 25
6
6
Cover image for asrlitcompare

asrlitcompare

A tool written in rmarkdown or assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.

  • ASReview
  • inter-rater reliability
  • literature screening
  • + 1
  • HTML
  • C++
  • JavaScript
  • + 14
2
0
Cover image for BridgeDb Java

BridgeDb Java

Java library for identifier mapping

  • Data
  • persistent identifiers
  • Java
  • Perl
  • Shell
  • + 4
18
117
Cover image for CBRAIN

CBRAIN

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.

  • CBRAIN
  • cluster
  • Data Analysis
  • + 6
  • Ruby
  • HTML
  • JavaScript
  • + 3
14
1
Cover image for COPASI

COPASI

COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.

  • Dynamics
  • optimization
  • Parameter estimation
  • + 3
  • C++
  • Java
  • Fortran
  • + 17
12
2500
Cover image for eEcology Annotation Tool

eEcology Annotation Tool

Visualize and annotate GPS measurements of bird movements.

  • Inter-operability & linked data
  • Visualization
  • HTML
  • Python
  • Mako
  • + 5
1
6
Cover image for eEcology-SMS-reciever

eEcology-SMS-reciever

If you have birds flying around carrying UvA-BiTS trackers, then this software can save the SMS messages containing the bird's last known positions which are sent by the tracker to the UvA Bird tracking system's central database.

  • Real time data analysis
  • Python
  • Perl
  • Mako
  • + 1
1
0
Cover image for eEcology Tracker calendar

eEcology Tracker calendar

Calendar overview with daily statistics of GPS-trackers used to track bird movements.

  • Visualization
  • Python
  • Makefile
  • JavaScript
  • + 5
1
2
Cover image for Hadrianus scripts

Hadrianus scripts

Scripts that transform cultural heritage relational databases into linked data by using cultural heritage ontologies.

  • Inter-operability & linked data
  • Shell
  • Perl
  • Python
2
0
Cover image for iReceptor Gateway

iReceptor Gateway

A Distributed Data Management System and Scientific Gateway for Mining Next Generation Sequence Data from Immune Responses.

  • immunogenomics
  • Immunology
  • iReceptor
  • PHP
  • Blade
  • Shell
  • + 7
12
3
Cover image for IRIDA

IRIDA

Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.

  • genomics
  • infectious disease
  • Java
  • JavaScript
  • TypeScript
  • + 6
3
1
Cover image for JURI

JURI

JURI (Jülich Reporting Interface) provides a template-driven fully client-based web framework to visualise data lists and associated data graphs.

  • JavaScript
  • HTML
  • CSS
  • + 5
3
0