Stefan Verhoeven
haddock3
Haddock3 (High Ambiguity Driven protein-protein DOCKing) is a an information-driven flexible docking approach for the modeling of biomolecular complexes.
- Inter-operability & linked data
- Python
- Fortran
- C
- + 9
ESMValTool
The Earth System Model eValuation Tool is a community diagnostics and performance metrics tool for the evaluation of Earth System Models that allows for routine comparison of models and observations.
- Big data
- Optimized data handling
- Visualization
- + 1
- NCL
- Python
- R
- + 6
spec2vec
spec2vec is a novel similarity measure for comparing mass spectrometry data, which learns peak representations using Word2Vec.
- Machine learning
- Text analysis & natural language processing
- Python
- Batchfile
- Makefile
Paired omics data platform
If you do metabolomics experiments with mass spectra and have sequenced the genomes of the samples, then the platform can help you link them.
- Inter-operability & linked data
- TypeScript
- JavaScript
- HTML
- + 3
MAGMa
MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.
- Big data
- Visualization
- Python
- JavaScript
- Makefile
- + 5
matchms
Python library for fuzzy comparison of mass spectrum data and other Python objects
- Big data
- Optimized data handling
- Python
- TeX
- Batchfile
- + 1
Netherlands eScience Center Python Template
Generic template for Python packages, so you can spend less time setting up and configuring, and comply with the Netherlands eScience Center Software Development Guide from the start.
- software development tools
- software sustainability
- template
- Jinja
- Python
- Shell
Via Appia Visualization
A web application which visualizes the point clouds and additional data gathered in the Via Appia project with WebGL.
- Visualization
- JavaScript
- HTML
- CSS
Research Software Directory
A content management system for research software, which promotes the visibility, reuse, and impact of research software.
- FAIR
- Research Software Impact
- Software Citation
- TypeScript
- Java
- PLpgSQL
- + 7
AHN2 pointcloud viewer
A web application able to visualize the AHN2 point cloud data of the Netherlands.
- Big data
- Real time data analysis
- Visualization
- JavaScript
- HTML
- CSS
- + 1
KLIFS KNIME nodes
If you are working in the KNIME worflow platform and need data about your favorite kinase receptor ligand interaction, then these nodes are for you.
- Workflow technologies
- Java
- Shell
- Scala
Xenon
If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.
- batch-job
- distributed computing
- FTP
- + 11
- Java
- Shell
- Batchfile