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Stefan Verhoeven
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Logo for haddock3

haddock3

Haddock3 (High Ambiguity Driven protein-protein DOCKing) is a an information-driven flexible docking approach for the modeling of biomolecular complexes.

  • Inter-operability & linked data
  • Python
  • Fortran
  • NASL
  • + 3
12
2627
Logo for ESMValTool

ESMValTool

The Earth System Model eValuation Tool is a community diagnostics and performance metrics tool for the evaluation of Earth System Models that allows for routine comparison of models and observations.

  • Big data
  • Optimized data handling
  • Visualization
  • + 1
  • NCL
  • Python
  • R
  • + 6
93
264
Logo for MAGMa

MAGMa

MAGMa is an online application for the automatic chemical annotation of mass spectrometry data.

  • Big data
  • Visualization
  • Python
  • JavaScript
  • Makefile
  • + 5
3
81
Logo for Research Software Directory

Research Software Directory

A content management system for research software, which promotes the visibility, reuse, and impact of research software.

  • FAIR
  • Research Software Impact
  • Software Citation
  • TypeScript
  • Java
  • PLpgSQL
  • + 7
25
38
Logo for Xenon

Xenon

If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.

  • batch-job
  • distributed computing
  • FTP
  • + 11
  • Java
  • Shell
  • Batchfile
11
13
Logo for Xenon command line interface

Xenon command line interface

A command line interface for the Xenon library that allows you to use remote machines to do your computations.

  • High performance computing
  • Java
  • Common Workflow Language
  • Dockerfile
  • + 2
2
9

eEcology Annotation Tool

Visualize and annotate GPS measurements of bird movements.

  • Inter-operability & linked data
  • Visualization
  • HTML
  • Python
  • Mako
  • + 5
1
6

MagnumPI - Potential Integrator

A package for the calculation of scattering angles and cross sections.

  • Inter-operability & linked data
  • Visualization
  • C++
  • Mathematica
  • Python
  • + 2
6
5

cffinit

A web form to initialize CITATION.cff files which you can use to include citation information into your software repository.

  • Software Citation
  • TypeScript
  • Vue
  • JavaScript
  • + 3
7
4

cffconvert

Command line tool to convert CITATION.cff files to various formats used by reference managers such as Zotero and JabRef.

  • Python
  • TeX
  • HTML
  • + 1
4
4
Logo for Xenon gRPC server

Xenon gRPC server

Run applications remotely via a gRPC interface.

  • High performance computing
  • Java
3
4

3D-e-Chem Virtual Machine

A freely available Virtual Machine encompassing tools, databases, and workflows for cheminformaticians, including new resources developed for ligand binding site comparisons and GPCR research.

  • Inter-operability & linked data
  • Workflow technologies
  • Shell
  • Smarty
2
3