Cunliang Geng
1-12 of 14
Logo for spec2vec

spec2vec

spec2vec is a novel similarity measure for comparing mass spectrometry data, which learns peak representations using Word2Vec.

  • Machine learning
  • Text analysis & natural language processing
  • Python
  • Batchfile
  • Makefile
10
162

FAIR Data Point

RESTful web service that enables data owners to expose their data sets using rich machine-readable metadata.

  • Big data
  • Inter-operability & linked data
  • Python
  • Makefile
  • Dockerfile
6
103
Logo for matchms

matchms

Python library for fuzzy comparison of mass spectrum data and other Python objects

  • Big data
  • Optimized data handling
  • Python
  • TeX
  • Batchfile
  • + 1
14
88
Logo for DeepRank

DeepRank

Deep learning framework for data mining protein-protein interactions using CNN

  • Big data
  • Machine learning
  • Optimized data handling
  • Python
  • R
  • C
  • + 2
8
77
Logo for Netherlands eScience Center Python Template

Netherlands eScience Center Python Template

Generic template for Python packages, so you can spend less time setting up and configuring, and comply with the Netherlands eScience Center Software Development Guide from the start.

  • Jinja
  • Python
  • Shell
23
46
Logo for iScore

iScore

A framework and predictor based on support vector machine and random walk graph kernel for scoring protein-protein interfaces.

  • Big data
  • Machine learning
  • Python
  • Cuda
  • Makefile
  • + 1
4
3

pdb2sql

Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.

  • Big data
  • Optimized data handling
  • Python
  • TeX
  • Makefile
2
3

PSSMGen

Generates consistent PSSM and PDB files for protein-protein complexes

  • Big data
  • High performance computing
  • Optimized data handling
  • Python
  • Makefile
2
2
Logo for GameBus FHIR Layer

GameBus FHIR Layer

Enable FHIR service for GameBus and beyond

  • Data Harmonization
  • FHIR
  • healthcare
  • + 1
  • Java
  • Dockerfile
  • Shell
5
1

Introduction to deep learning lesson

This lesson gives an introduction to deep learning.

  • deep learning
  • lesson
  • python
  • Jupyter Notebook
  • TeX
  • Python
  • + 1
13
0

NPLinker

Data mining microbial natural products by integrating genomics and metabolomics data

  • Data processing
  • multi-omics integration
  • Jupyter Notebook
  • Python
  • Shell
  • + 2
5
0
Logo for TaxoTagger

TaxoTagger

DNA barcode identification, powered by semantic searching.

  • Fungi
  • Machine learning
  • semantic search
  • + 3
  • Python
  • Makefile
  • Mustache
1
0