Netherlands eScience Center
National platform for the development and application of domain overarching software and methods for the scientific community
seahtrue
Seahtrue processes XF analyzer data on oxygen consumption and acidification from Agilent Wave .xlsx exports into tidy, nested tibbles, enabling reproducible analysis, preprocessing checks, advanced visualisation, and statistics for open metabolic research.
- bioconductor
- metabolism
- R
- + 2
- (R)
self-hosted runners
Collection of resources to set up GitHub runners on self-hosted infrastructure
- High performance computing
- (Dockerfile)
- (Shell)
GitHub action to set up apptainer
GitHub action for setting up apptainer in a Continous Integration job
- High performance computing
- (JavaScript)
- (Shell)
- (TypeScript)
sfb-annotator
Annotate field books of natural history collections
- Inter-operability & linked data
- (CSS)
- (Dockerfile)
- (Java)
- + 4
ShareTrait website
Share Trait web application is a web application that allows users to deposit trait data in the Share Trait database.
- Data
- Inter-operability & linked data
- metadata
ShiCo
A visualization that shows how the meaning we attach to a given concept shifts over time.
- Text analysis & natural language processing
- Visualization
- (CSS)
- (Dockerfile)
- (HTML)
- + 3
SIGA.py
Make genome annotations semantically interoperable
- Inter-operability & linked data
- (Python)
sirup
Sirup is an open-source Python package that makes it easy to connect to, and rotate across, VPN servers provided by services such as ProtonVPN and Surfshark.
- ip-rotation
- openvpn
- python
- + 1
- (Python)
- (Shell)
SmartPlay
Android OS Wear Application to measure children's activity when playing.
- Psychology
- Real time data analysis
- Visualization
- (HTML)
- (JavaScript)
- (Kotlin)
- + 2
SMP decision tree
SMP decision tree is a questionnaire for creating a Software Management Plan (SMP).
- metadata
- Project management
- software sustainability
- (Python)
- (Shell)
snakemake-storage-plugin-rucio
A Snakemake storage plugin that handles files available through [Rucio](https://rucio.cern.ch/).
- rucio
- snakemake
- (Python)
snakemake-wrf
A snakemake workflow to run WRF, including pre- and postprocessing. See our blog post for a detailed description.
- geospatial
- High performance computing
- python
- + 1
- ("Jupyter Notebook")
- (Python)
- (Shell)