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OpenMS

OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.

C++
mass spectrometry
metabolomics
+ 1

C++
MAXScript
Cython
+ 13

OpenPNM

OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.

Pore network modeling

C++
MAXScript
Cython
+ 13

Orange Hackathon

Orange modules for text processing in the project What Works When for Whom

Jupyter Notebook
Python
CSS
+ 2

splithalfr

Estimates split-half reliabilities for scoring algorithms of cognitive tasks and questionnaires.

Data Analysis
Statistics

sv-channels

Genome-wide detection of structural variants using deep learning

Machine learning

Python
Jupyter Notebook
R
+ 1

talkr

{talkr} is an R package that offers a set of convenience functions for quality control, visualisation and analysis of conversational data. Most notably it provides a range of plotting functions that play well with ggplot and the tidyverse.

conversation
talk
turn-taking
+ 1

TIMP

TIMP is an R package for fitting superposition models that implements the partitioned variable projection algorithm. The package has been extensively applied to modeling spectroscopy and Fluorescence Lifetime Imaging Microscopy (FLIM) datasets. It serves as the backend for the Glotaran software.

global analysis
target analysis
time-resolved spectroscopy

Turing Data Safe Haven

Data Safe Haven is an open-source framework for creating Trusted Research Environments (TREs) to analyse sensitive data. It provides a set of scripts that will allow you to deploy, administer and use your own TRE on Microsoft Azure cloud.

Cloud
cloud storage
Infrastructure as code
+ 3

Python
Shell
R
+ 2

Yoda

A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

HTML
Jinja
Python
+ 5