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1-12 of 17
Cover image for haddock3

haddock3

Haddock3 (High Ambiguity Driven protein-protein DOCKing) is a modular software for for the integrative modeling and refinement of biomolecular complexes.

  • biomolecular complexes
  • docking
  • energetics
  • + 4
  • Python
  • Fortran
  • C++
  • + 10
12
5958
Cover image for COPASI

COPASI

COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.

  • Dynamics
  • optimization
  • Parameter estimation
  • + 3
  • C++
  • Java
  • Fortran
  • + 17
12
2693
Cover image for Parallel Ice Sheet Model (PISM)

Parallel Ice Sheet Model (PISM)

An open-source modelling framework for ice sheets and glaciers

  • C++
  • geophysics
  • Glacier
  • + 5
  • C++
  • Python
  • TeX
  • + 9
33
877
Cover image for AMUSE

AMUSE

Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.

  • High performance computing
  • Multi-scale & multi model simulations
  • Workflow technologies
  • C
  • Fortran
  • Python
  • + 26
6
280
Cover image for OMUSE

OMUSE

A Python environment to interface and couple oceanographic and other earth system model codes.

  • High performance computing
  • Multi-scale & multi model simulations
  • Fortran
  • Python
  • HTML
  • + 10
8
24
Cover image for MUSCLE3

MUSCLE3

MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.

  • High performance computing
  • Multi-scale & multi model simulations
  • Fortran
  • C++
  • Python
  • + 4
4
22
Cover image for DALES

DALES

DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.

  • Fortran
  • C
  • TeX
  • + 8
24
11
Cover image for Abinit

Abinit

Abinit is a software package based on density functional theory for calculating the properties of solids.

  • Fortran
  • Python
  • M4
  • + 15
3
0
Cover image for CHAMP-EU

CHAMP-EU

The Cornell-Holland Ab-initio Materials Package (CHAMP) is a quantum Monte Carlo suite of programs for electronic structure calculations. The code is developed by Claudia Filippi and Saverio Moroni, with significant contributions by Ravindra Shinde, N. Renaud, V. Azizi, E. Landinez, and S. Shepard.

  • Chemistry
  • High performance computing
  • Physics
  • + 1
  • C
  • Fortran
  • Nemerle
  • + 16
7
0
Cover image for Davidson diagonalization in Fortran

Davidson diagonalization in Fortran

This package contains a Modern Fortran implementation of the Davidson diagonalization algorithms to compute several eigenvalue-eigenvector pairs of a symmetric matrix

  • High performance computing
  • Fortran
  • CMake
  • Python
3
0
Cover image for I-EMIC

I-EMIC

An Implicit Earth system Model of Intermediate Complexity

  • ESM
  • oceanography
  • Fortran
  • C
  • C++
  • + 6
0
0
Cover image for minimism

minimism

A minimal distributed MPI port from UFEMISM, used as a basis for UFEMISM2.0

  • Finite volume method
  • ice sheet
  • MPI
  • + 1
  • Fortran
  • MATLAB
  • Mathematica
  • + 4
4
0