All software
Via Appia Visualization
A web application which visualizes the point clouds and additional data gathered in the Via Appia project with WebGL.
- Visualization
- CSS
- HTML
- JavaScript
LitStudy
Explore scientific literature using Python from the comfort of a Jupyter notebook
- Inter-operability & linked data
- Text analysis & natural language processing
- Visualization
- HTML
- Python
InstaNovo
InstaNovo is a transformer neural network with the ability to translate fragment ion peaks into the sequence of amino acids that make up the studied peptide(s). InstaNovo+ is a multinomial diffusion model that further improves performance by iterative refinement of predicted sequences.
- deep learning
- Machine learning
- mass spectrometry
- + 1
- Makefile
- Python
IUI2025_ConvXAI
User Interaction Dataset associated with IUI 2025 paper "Is Conversational XAI All You Need? Human-AI Decision Making With a Conversational XAI Assistant"
- Appropriate Reliance
- Conversational XAI Interface
- Human-AI Decision Making
- Jupyter Notebook
- Markdown
- Other
- + 1
compareMS2
compareMS2 is a tool for direct comparison of tandem mass spectrometry (MS/MS) datasets, typically from LC-MS/MS, in proteomics or metabolomics, defining a distance as a function of the share of similar spectra. Applications span biomedicine, phylogenetics, forensics, ecology and food science.
- Ecology
- Food Science
- Forensics
- + 4
- CSS
- Go
- HTML
- + 3
CorticalSim
Fast simulation of plant cortical microtubules.
- C++
- Meson
- Python
- + 1
3D-e-Chem Virtual Machine
A freely available Virtual Machine encompassing tools, databases, and workflows for cheminformaticians, including new resources developed for ligand binding site comparisons and GPCR research.
- Inter-operability & linked data
- Workflow technologies
- Shell
- Smarty
KLIFS KNIME nodes
If you are working in the KNIME worflow platform and need data about your favorite kinase receptor ligand interaction, then these nodes are for you.
- Workflow technologies
- Java
- Scala
- Shell
Data and software supporting the publication "Telecom-band quantum interference of frequency-converted photons from remote detuned NV centers"
Data and software supporting the publication "Telecom-band quantum interference of frequency-converted photons from remote detuned NV centers"
- Quantum Frequency Conversion
- quantum networks
- Telecom wavelength
- + 1
simplicial_convolutions
Code underlying: Simplicial Convolutional Filters
- convolution
- neural networks
- simplicial complex
- large-text-file
- Markdown
- Matlab
- + 1
Supplementary materials for the article: Towards future pedestrian-vehicle interactions: Introducing theoretically-supported AR prototypes.
Supplementary materials for the article: Towards future pedestrian-vehicle interactions: Introducing theoretically-supported AR prototypes.
- Augmented Reality
- Automated vehicles
- autonomous vehicles
- + 3
Supplementary Materials: When is variable importance estimation in species distribution modelling affected by spatial correlation?
Supplementary Materials: When is variable importance estimation in species distribution modelling affected by spatial correlation?
- empirical modelling
- niche models
- raster
- + 8