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Cover image for BIAS

BIAS

A toolbox for detecting structural bias in continuous optimization heuristics.

  • Bias
  • Metaheuristics
  • optimization
  • + 1
  • Jupyter Notebook
  • Python
  • R
3
12
Cover image for LinkAhead

LinkAhead

Open Source Research Data Management Software

  • Data
  • ETL
  • Inter-operability & linked data
  • + 4
  • Java
  • Shell
  • Python
  • + 2
6
12
Cover image for DALES

DALES

DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.

  • Fortran
  • C
  • TeX
  • + 8
24
11
Cover image for ExploreASL

ExploreASL

ExploreASL is a pipeline and toolbox for image processing and statistics of arterial spin labeling perfusion MR images. It is designed as a multi-OS, open-source, collaborative framework that facilitates cross-pollination between image processing method developers and clinical investigators.

  • ASL
  • Image processing
  • MRI
  • MATLAB
  • C
  • Python
7
11
Cover image for FastMLC

FastMLC

Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.

  • Big data
  • Machine learning
  • Visualization
  • C++
  • C
  • Makefile
  • + 5
5
11
Cover image for SIGA.py

SIGA.py

Make genome annotations semantically interoperable

  • Inter-operability & linked data
  • Python
2
11
Cover image for Cross-perspective Topic Modeling

Cross-perspective Topic Modeling

An application that uses cross-perspective topic modeling to extract topics and opinions from text and provides insight into how they change over time.

  • Text analysis & natural language processing
  • Python
  • Jupyter Notebook
  • Shell
3
10
Cover image for MDStudio

MDStudio

A tool to run molecular dynamics workflows.

  • High performance computing
  • Real time data analysis
  • Workflow technologies
  • Python
  • CSS
  • TypeScript
  • + 5
4
10
Cover image for Xenon command line interface

Xenon command line interface

A command line interface for the Xenon library that allows you to use remote machines to do your computations.

  • High performance computing
  • Java
  • Common Workflow Language
  • Dockerfile
  • + 2
2
9
Cover image for Clustering Geo-data Cubes

Clustering Geo-data Cubes

Tool to perform cluster analysis of multi-dimensional geospatial data, running on local or distributed systems.

  • Big data
  • geospatial
  • Machine learning
  • + 1
  • Python
  • Jupyter Notebook
  • TeX
7
8
Cover image for ChemSpaX: A Python tool for local chemical space exploration

ChemSpaX: A Python tool for local chemical space exploration

ChemSpaX is a Python package that can be used for local chemical space exploration of any structure. This is done by placing substuents on a pre-defined skeleton. A substituent can be chosen from an existing library and can be attached to the skeleton.

  • catalysis
  • Chemistry
  • python
  • Python
  • Shell
3
8
Cover image for pdb2sql

pdb2sql

Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.

  • Big data
  • Optimized data handling
  • Python
  • TeX
  • Makefile
2
8